Hello, I found a curious bug in git version 2.9.0.windows.1 (run on Windows 7 via git bash). If I clone a repository containing submodules and run a "git submodule deinit" on any of the submodules of this repository without executing another git command, this command fails. For instance: (let's say the repo MyProject contains 2 submodules: Submodule1 and Submodule2) $ git clone ssh://****/MyProject [ ... "git clone" output ... ] $ cd MyProject $ git submodule deinit Submodule1 fatal: Please stage your changes to .gitmodules or stash them to proceed Submodule work tree 'Submodule1' contains local modifications; use '-f' to discard them $ git submodule deinit Submodule2 fatal: Please stage your changes to .gitmodules or stash them to proceed Submodule work tree 'Submodule2' contains local modifications; use '-f' to discard them First the error message is strange. Then what is even stranger is that the error disappears if a "git status" is run before the submodule deinit... $ git clone ssh://****/MyProject [ ... "git clone" output ... ] $ cd MyProject $ git submodule deinit Submodule1 fatal: Please stage your changes to .gitmodules or stash them to proceed Submodule work tree 'Submodule1' contains local modifications; use '-f' to discard them $ git status [ ... "git status" output ...] $ git submodule deinit Submodule1 Cleared directory 'Submodule1' I have been able to reproduce this error at least 10 times and with different repositories so I do not think it comes from the state of my repositories. Moreover, the use of "--recursive" argument to the "git clone" command did not change anything. Are you able to reproduce this problem? Thank you in advance. Best regards, Thomas