on Amazon EFS (NFS): "Reference directory conflict: refs/heads/" with status code 128

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Elastic File System (EFS) is Amazon's scalable filesystem product that
is exposed to the OS as an NFS mount. We're using EFS to host the
filesystem used by a Jenkins CI server. Sometimes when Jenkins tries
to git fetch, we get this error:
$ git -c core.askpass=true fetch --tags --progress
git@xxxxxxxxxx:mediasilo/dodo.git
+refs/pull/*:refs/remotes/origin/pr/*
fatal: Reference directory conflict: refs/heads/
$ echo $? 128

Has anyone seen anything like this before? Any tips on how to troubleshoot it?

Related Jenkins issue: https://issues.jenkins-ci.org/browse/JENKINS-37653
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