strange behavior with nonexistant or partially populated ~/.config/git/gitk

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If ~/.config/git/gitk doesn't exist, I get small fonts (fine) and ugly
hard-to-read dark green branch labels.

The fix for the dark green problem is here:

     http://stackoverflow.com/questions/26025810/gtk-apps-show-green-too-dark

But after doing:

      echo 'set headbgcolor lime' >~/.config/git/gitk ; gitk

I end up with a much more extensive ~/.config/git/gitk that changes
fonts, window geometry, etc. to be different than the defaults that
you get if you don't have ~/.config/git/gik.  This is weird.

It should work one of these ways:

     1.  Any setting in ~/.config/git/gitk override the defaults, but
the file is not required, and running gitk doesn't create it or change
with it's contents.

     2.  ~/.config/git/gitk is always created if it doesn't exist or
isn't fully populated, and it gets the default values for anything not
defined.

The full ~/.config/git/gitk that gets created for me is below.  I
don't know where the setting that get used if it doesn't exist come
from.

set mainfont {sans 9}
set textfont {monospace 9}
set uifont {sans 9 bold}
set tabstop 8
set findmergefiles 0
set maxgraphpct 50
set maxwidth 16
set cmitmode patch
set wrapcomment none
set autoselect 1
set autosellen 40
set showneartags 1
set maxrefs 20
set visiblerefs {"master"}
set hideremotes 0
set showlocalchanges 1
set datetimeformat {%Y-%m-%d %H:%M:%S}
set limitdiffs 1
set uicolor grey85
set want_ttk 1
set bgcolor white
set fgcolor black
set uifgcolor black
set uifgdisabledcolor #999
set colors {lime red blue magenta darkgrey brown orange}
set diffcolors {red "#00a000" blue}
set mergecolors {red blue lime purple brown "#009090" magenta
"#808000" "#009000" "#ff0080" cyan "#b07070" "#70b0f0" "#70f0b0"
"#f0b070" "#ff70b0"}
set markbgcolor #e0e0ff
set diffcontext 3
set selectbgcolor gray85
set foundbgcolor yellow
set currentsearchhitbgcolor orange
set extdifftool meld
set perfile_attrs 0
set headbgcolor lime
set headfgcolor black
set headoutlinecolor black
set remotebgcolor #ffddaa
set tagbgcolor yellow
set tagfgcolor black
set tagoutlinecolor black
set reflinecolor black
set filesepbgcolor #aaaaaa
set filesepfgcolor black
set linehoverbgcolor #ffff80
set linehoverfgcolor black
set linehoveroutlinecolor black
set mainheadcirclecolor yellow
set workingfilescirclecolor red
set indexcirclecolor lime
set circlecolors {white blue gray blue blue}
set linkfgcolor blue
set circleoutlinecolor black
set geometry(main) 1837x989+5+53
set geometry(state) normal
set geometry(topwidth) 1837
set geometry(topheight) 300
set geometry(pwsash0) "680 1"
set geometry(pwsash1) "1020 1"
set geometry(botwidth) 850
set geometry(botheight) 684
set permviews {}
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