Segmentation fault in git apply

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This is a mac with a fresh build of git from pu branch, commit 53b80d0.

With my gitconfig looking like

[user]
    email = blume.mike@xxxxxxxxx
    name = Michael Blume
[apply]
    whitespace = fix
[core]
    whitespace = fix,trailing-space,space-before-tab, tab-in-indent, tabwidth=4

If I run
git clone git@xxxxxxxxxx:MichaelBlume/clojure.git
cd clojure
git checkout origin/rebase-start
git rebase origin/rebase-base

I get

src/jvm/clojure/lang/Compiler.java                          |  26
+++++++++++++++++---------
 test/clojure/test_clojure/compilation.clj                   |  33
++++++++++++++++++++++++++++++++-
 test/clojure/test_clojure/compilation/examples_clj_1561.clj | 121
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 3 files changed, 170 insertions(+), 10 deletions(-)
 create mode 100644 test/clojure/test_clojure/compilation/examples_clj_1561.clj
First, rewinding head to replay your work on top of it...
Applying: CLJ-1603 - add reducible cycle, iterate, repeat
Applying: CLJ-1515 Reify range
Applying: CLJ-1499 Direct iterators for PersistentHashMap,
APersistentSet, PersistentQueue, and PersistentStructMap, and records.
Added new IMapIterable interface for key and val iterators.
Applying: CLJ-1602 Make keys and vals return Iterable result
Applying: fix AOT bug preventing overriding of clojure.core functions
Applying: catch multiple rest forms
Applying: zipmap using iterators and transient maps
Applying: Define merge/merge-with after reduce has loaded
Applying: very simple test of the merge function
Applying: Support get on arbitrary java.util.List instances
Applying: CLJ-1451 add take-until
Applying: CLJ-1606 - complete eduction's xform without completing outer rfn
Applying: add unrolled vector implementation
Applying: add transient? predicate
Applying: fix emitted line numbers
Using index info to reconstruct a base tree...
M src/jvm/clojure/lang/Compiler.java
Falling back to patching base and 3-way merge...
Auto-merging src/jvm/clojure/lang/Compiler.java
Applying: just use a not
Applying: trailing whitespace
Applying: don't mix tabs/spaces in clojure.xml/emit-element
Applying: avoid mixing tabs with spaces in clojure core code
Applying: don't optimize for defrecord lookup if keyword is namespaced
Applying: CLJ-1572 - Extend CollReduce to IReduceInit for supported arity
Applying: unrolled impls for maps
Applying: CLJ-703: Remove flush and sync calls when writing class files.
Applying: CLJ-1078: Add queue and queue? to clojure.core
Applying: make RT.boundedLength lazier
Applying: first try for adding compare
Applying: Fix for #CLJ-1565
Applying: CLJ-1074: Read +/- Infinity and NaN
Applying: Fix CLJ-1074 for EdnReader too, see
eaeda2e7bf2697e565decdf14a8a99fbf8588c57
Applying: add get-and-set! to expose AtomicReference.getAndSet() for atoms
Applying: CLJ-1472 Locking macro without explicit monitor-enter, monitor-exit
Applying: CLJ-1449: Add starts-with? ends-with? contains? to clojure.string
Applying: if test expr of an if statement is a literal, don't emit the
runtime test
Applying: evaluate def symbol metadata only once
Applying: CLJ-1295: Speed up dissoc on array-maps
Applying: some throwing
Applying: don't pass offset to ArrayChunk
Applying: make EMPTY accessible
Applying: add handy create methods
Applying: regenerate
Applying: regenerate
/Users/michael.blume/libexec/git-core/git-am: line 854: 92059
Segmentation fault: 11  git apply --index "$dotest/patch" > /dev/null
2>&1
/Users/michael.blume/workspace/clojure/.git/rebase-apply/patch:13: tab
in indent.
   IPersistentVector v = (IPersistentVector) asTransient().conj(val)
/Users/michael.blume/workspace/clojure/.git/rebase-apply/patch:14: tab
in indent.
   .persistent();
/Users/michael.blume/workspace/clojure/.git/rebase-apply/patch:15: tab
in indent.
   return (IPersistentVector) ((IObj) v).withMeta(meta);
/Users/michael.blume/workspace/clojure/.git/rebase-apply/patch:25: tab
in indent.
ITransientCollection coll = PersistentVector.EMPTY
/Users/michael.blume/workspace/clojure/.git/rebase-apply/patch:27: tab
in indent.
return (ITransientVector) coll.conj(e0).conj(e1).conj(e2)
warning: squelched 1 whitespace error
warning: 6 lines add whitespace errors.
Using index info to reconstruct a base tree...
M src/jvm/clojure/lang/PersistentUnrolledVector.java
<stdin>:13: tab in indent.
   IPersistentVector v = (IPersistentVector) asTransient().conj(val)
<stdin>:14: tab in indent.
   .persistent();
<stdin>:15: tab in indent.
   return (IPersistentVector) ((IObj) v).withMeta(meta);
<stdin>:25: tab in indent.
ITransientCollection coll = PersistentVector.EMPTY
<stdin>:27: tab in indent.
return (ITransientVector) coll.conj(e0).conj(e1).conj(e2)
warning: squelched 1 whitespace error
warning: 6 lines applied after fixing whitespace errors.
Falling back to patching base and 3-way merge...
fatal: Unable to create
'/Users/michael.blume/workspace/clojure/.git/index.lock': File exists.

If no other git process is currently running, this probably means a
git process crashed in this repository earlier. Make sure no other git
process is running and remove the file manually to continue.
Failed to merge in the changes.
Patch failed at 0041 regenerate
The copy of the patch that failed is found in:
   /Users/michael.blume/workspace/clojure/.git/rebase-apply/patch

When you have resolved this problem, run "git rebase --continue".
If you prefer to skip this patch, run "git rebase --skip" instead.
To check out the original branch and stop rebasing, run "git rebase --abort".
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