Using Eclipse git plugin

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This may be more of an Eclipse question than a git question but
hopefully someone on this list knows both. I now have a working git
central repository (on Linux) and a local repository clone (on Windows).
I can see and edit my files in Eclipse, commit them and push them to the
remote repository. The problem I am having now is developing my code in
Eclipse. It seems I can no longer run the code as the 'Run as
Application' menu item is missing. How do I test my code now? TIA.

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