Unexpected directories from read-tree

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I'm testing out the sparse checkout feature of Git on my large (14GB)
repository and am running into a problem. When I add "dir1/" to
sparse-checkout and then run "git read-tree -mu HEAD" I see dir1 as
expected. But when I add "dir2/" to sparse-checkout and read-tree
again I see dir2 and dir3 appear and they're not nested. If I replace
"dir2/" with "dir3/" in the sparse-checkout file, then I see dir1 and
dir3 but not dir2 as expected again. How can I debug this problem?
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