help for a git newbie please

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I don't understand the docs when they talk about hooks.  I have tried making my .git/hooks samples executable and they don't have any suffix to remove, so they should just run.  However, every time I make a new clone, the changes I made to the hooks are gone.  Just the samples get put into  the clone again.  How do I put a hook in place that every developer will get and execute?  If I should be using server side hooks, where exactly would those go?  Should I modify the hooks under my repositories directory?
--------------------------
Regards,
Marlene Cote
Affirmed Networks
978-268-0821 



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