I think it is a known problem that ‘git replace’ cannot be used safely to replace blobs used in the currently checked out commit. The man page says: Comparing blobs or trees that have been replaced with those that replace them will not work properly. Indeed, in practice it produces problems. [1] I would like to start to fix this. But the correct semantics are not obvious to me: - When writing a tree from an index that includes replaced blobs, should the result use the original blobs or the replaced ones? - When reading a tree that includes replaced blobs, should the resulting cache entries use the original blobs or the replaced ones? My hunch is to say both should use the replaced blobs. This way, replacing a blob in a checked-out index would behave in a more intuitive way, and git filter-branch would make permanent any substitutions requested through replaced blob entries. I have not thought it through completely, though. Thoughts? Jonathan [1] For example, git init repo cd repo echo first > 1.txt echo second > 2.txt git add 1.txt 2.txt git commit -m demonstration git show --raw git ls-tree HEAD | awk ' NR == 1 { first = $3 } NR == 2 { system("git replace " first " " $3) } ' git status rm * git checkout -f git status which one would expect to result in a clean tree, produces Initialized empty Git repository in /tmp/repo/.git/ [master (root-commit) 998cc27] demonstration 2 files changed, 2 insertions(+), 0 deletions(-) create mode 100644 1.txt create mode 100644 2.txt commit 998cc270986f68450f00bda5e5db62f31367ff96 Author: Jonathan Nieder <jrnieder@xxxxxxxxx> Date: Sat Feb 6 18:48:50 2010 -0600 demonstration :000000 100644 0000000... 9c59e24... A 1.txt :000000 100644 0000000... e019be0... A 2.txt # On branch master nothing to commit (working directory clean) # On branch master # Changed but not updated: # (use "git add <file>..." to update what will be committed) # (use "git checkout -- <file>..." to discard changes in working # directory) # # modified: 1.txt # no changes added to commit (use "git add" and/or "git commit -a") -- To unsubscribe from this list: send the line "unsubscribe git" in the body of a message to majordomo@xxxxxxxxxxxxxxx More majordomo info at http://vger.kernel.org/majordomo-info.html