Could someone help me understand this behavior with LTO? I am working with an ARM cross compiler, arm-none-eabi. I am trying to make the compiler compile two separate files in different ARM modes/targets, one of them in ARM, one of them in Thumb. When I compile the two source files without -flto, one with -mthumb -thumb-interwork, and the other with the same flags just -marm appended as to override -mthumb, the resulting binary, when dissasembled with objdump, has code in both modes, and it is rather aparent. When I enable -flto, the resulting program ends up in a single mode, all of it. I am attaching a couple of files to this email: arm.c : The file to be compiled as ARM main.c : The main function, compiled as Thumb Makefile : Add -flto to LDFLAGS and CFLAGS to enable lto, remvove it to disable it. lto.txt : The arm-none-eabi-objdump dissassembly of the resulting lto binary. no-lto.txt : the arm-none-eabi-objdump dissassembly of the resulting binary without lto. Is there something obvious about the behavior of LTO that I'm missing? Does it just generate the final machine code at link time, scrapping the flags used to compile object files? Thanks, Gabriel E. Marcano