Hello:
my configure.in :
AC_INIT(main, 0.1, zqiang320@xxxxxxxxx)
AM_INIT_AUTOMAKE(foreign)
AC_PROG_CC
AC_PROG_CXX
AM_PROG_LIBTOOL
AC_OUTPUT(Makefile libsbml/src/Makefile)
Makefile.am :
bin_PROGRAMS = main
SUBDIRS = libsbml/src .
main_SOURCES = main.c
main_LDADD = sundials/src/cvodes/libsundials_cvodes.la sundials/src/nvec_ser/libsundials_nvecserial.la ./libsbml/src/libsbml.la -lm
AM_CPPFLAGS = -Isundials/include -Ilibsbml/include
and execute
$ autoreconf -vi
autoreconf: Entering directory `.'
autoreconf: configure.in: not using Gettext
autoreconf: running: aclocal
autoreconf: configure.in: tracing
autoreconf: running: libtoolize --copy
autoreconf: running: /usr/bin/autoconf
autoreconf: configure.in: not using Autoheader
autoreconf: running: automake --add-missing --copy --no-force
configure.in:2: installing `./install-sh'
configure.in:2: installing `./missing'
autoreconf: Leaving directory `.'
$ make
Making all in libsbml/src
make[1]: Entering directory `/home/internet/mydoc/test_pj/libsbml/src'
/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"main\" -DPACKAGE_TARNAME=\"main\" -DPACKAGE_VERSION=\"0.1\" -DPACKAGE_STRING=\"main\ 0.1\" -DPACKAGE_BUGREPORT=\"zqiang320@xxxxxxxxx\" -DPACKAGE=\"main\" -DVERSION=\"0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -I../include -g -O2 -MT libsbml-version.lo -MD -MP -MF .deps/libsbml-version.Tpo -c -o libsbml-version.lo `test -f 'common/libsbml-version.cpp' || echo './'`common/libsbml-version.cpp
mkdir .libs
g++ -DPACKAGE_NAME=\"main\" -DPACKAGE_TARNAME=\"main\" -DPACKAGE_VERSION=\"0.1\" "-DPACKAGE_STRING=\"main 0.1\"" -DPACKAGE_BUGREPORT=\"zqiang320@xxxxxxxxx\" -DPACKAGE=\"main\" -DVERSION=\"0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -I../include -g -O2 -MT libsbml-version.lo -MD -MP -MF .deps/libsbml-version.Tpo -c common/libsbml-version.cpp -fPIC -DPIC -o .libs/libsbml-version.o
g++ -DPACKAGE_NAME=\"main\" -DPACKAGE_TARNAME=\"main\" -DPACKAGE_VERSION=\"0.1\" "-DPACKAGE_STRING=\"main 0.1\"" -DPACKAGE_BUGREPORT=\"zqiang320@xxxxxxxxx\" -DPACKAGE=\"main\" -DVERSION=\"0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -I../include -g -O2 -MT libsbml-version.lo -MD -MP -MF .deps/libsbml-version.Tpo -c common/libsbml-version.cpp -o libsbml-version.o >/dev/null 2>&1
mv -f .deps/libsbml-version.Tpo .deps/libsbml-version.Plo
/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"main\" -DPACKAGE_TARNAME=\"main\" -DPACKAGE_VERSION=\"0.1\" -DPACKAGE_STRING=\"main\ 0.1\" -DPACKAGE_BUGREPORT=\"zqiang320@xxxxxxxxx\" -DPACKAGE=\"main\" -DVERSION=\"0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -I../include -g -O2 -MT ASTNode.lo -MD -MP -MF .deps/ASTNode.Tpo -c -o ASTNode.lo `test -f 'math/ASTNode.cpp' || echo './'`math/ASTNode.cpp
g++ -DPACKAGE_NAME=\"main\" -DPACKAGE_TARNAME=\"main\" -DPACKAGE_VERSION=\"0.1\" "-DPACKAGE_STRING=\"main 0.1\"" -DPACKAGE_BUGREPORT=\"zqiang320@xxxxxxxxx\" -DPACKAGE=\"main\" -DVERSION=\"0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -I../include -g -O2 -MT ASTNode.lo -MD -MP -MF .deps/ASTNode.Tpo -c math/ASTNode.cpp -fPIC -DPIC -o .libs/ASTNode.o
g++ -DPACKAGE_NAME=\"main\" -DPACKAGE_TARNAME=\"main\" -DPACKAGE_VERSION=\"0.1\" "-DPACKAGE_STRING=\"main 0.1\"" -DPACKAGE_BUGREPORT=\"zqiang320@xxxxxxxxx\" -DPACKAGE=\"main\" -DVERSION=\"0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -I../include -g -O2 -MT ASTNode.lo -MD -MP -MF .deps/ASTNode.Tpo -c math/ASTNode.cpp -o ASTNode.o >/dev/null 2>&1
mv -f .deps/ASTNode.Tpo .deps/ASTNode.Plo
/bin/sh ../../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"main\" -DPACKAGE_TARNAME=\"main\" -DPACKAGE_VERSION=\"0.1\" -DPACKAGE_STRING=\"main\ 0.1\" -DPACKAGE_BUGREPORT=\"zqiang320@xxxxxxxxx\" -DPACKAGE=\"main\" -DVERSION=\"0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -I../include -g -O2 -MT FormulaTokenizer.lo -MD -MP -MF .deps/FormulaTokenizer.Tpo -c -o FormulaTokenizer.lo `test -f 'math/FormulaTokenizer.c' || echo './'`math/FormulaTokenizer.c
gcc -DPACKAGE_NAME=\"main\" -DPACKAGE_TARNAME=\"main\" -DPACKAGE_VERSION=\"0.1\" "-DPACKAGE_STRING=\"main 0.1\"" -DPACKAGE_BUGREPORT=\"zqiang320@xxxxxxxxx\" -DPACKAGE=\"main\" -DVERSION=\"0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -I../include -g -O2 -MT FormulaTokenizer.lo -MD -MP -MF .deps/FormulaTokenizer.Tpo -c math/FormulaTokenizer.c -fPIC -DPIC -o .libs/FormulaTokenizer.o
gcc -DPACKAGE_NAME=\"main\" -DPACKAGE_TARNAME=\"main\" -DPACKAGE_VERSION=\"0.1\" "-DPACKAGE_STRING=\"main 0.1\"" -DPACKAGE_BUGREPORT=\"zqiang320@xxxxxxxxx\" -DPACKAGE=\"main\" -DVERSION=\"0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -I../include -g -O2 -MT FormulaTokenizer.lo -MD -MP -MF .deps/FormulaTokenizer.Tpo -c math/FormulaTokenizer.c -o FormulaTokenizer.o >/dev/null 2>&1
mv -f .deps/FormulaTokenizer.Tpo .deps/FormulaTokenizer.Plo
/bin/sh ../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"main\" -DPACKAGE_TARNAME=\"main\" -DPACKAGE_VERSION=\"0.1\" -DPACKAGE_STRING=\"main\ 0.1\" -DPACKAGE_BUGREPORT=\"zqiang320@xxxxxxxxx\" -DPACKAGE=\"main\" -DVERSION=\"0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -I../include -g -O2 -MT List.lo -MD -MP -MF .deps/List.Tpo -c -o List.lo `test -f 'util/List.cpp' || echo './'`util/List.cpp
g++ -DPACKAGE_NAME=\"main\" -DPACKAGE_TARNAME=\"main\" -DPACKAGE_VERSION=\"0.1\" "-DPACKAGE_STRING=\"main 0.1\"" -DPACKAGE_BUGREPORT=\"zqiang320@xxxxxxxxx\" -DPACKAGE=\"main\" -DVERSION=\"0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -I../include -g -O2 -MT List.lo -MD -MP -MF .deps/List.Tpo -c util/List.cpp -fPIC -DPIC -o .libs/List.o
g++ -DPACKAGE_NAME=\"main\" -DPACKAGE_TARNAME=\"main\" -DPACKAGE_VERSION=\"0.1\" "-DPACKAGE_STRING=\"main 0.1\"" -DPACKAGE_BUGREPORT=\"zqiang320@xxxxxxxxx\" -DPACKAGE=\"main\" -DVERSION=\"0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -I../include -g -O2 -MT List.lo -MD -MP -MF .deps/List.Tpo -c util/List.cpp -o List.o >/dev/null 2>&1
mv -f .deps/List.Tpo .deps/List.Plo
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -version-info 0:0:0 -o libsbml.la -rpath /usr/local/lib libsbml-version.lo ASTNode.lo FormulaTokenizer.lo List.lo
g++ -shared -nostdlib /usr/lib/gcc/i386-redhat-linux/4.3.0/../../../crti.o /usr/lib/gcc/i386-redhat-linux/4.3.0/crtbeginS.o .libs/libsbml-version.o .libs/ASTNode.o .libs/FormulaTokenizer.o .libs/List.o -L/usr/lib/gcc/i386-redhat-linux/4.3.0 -L/usr/lib/gcc/i386-redhat-linux/4.3.0/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i386-redhat-linux/4.3.0/crtendS.o /usr/lib/gcc/i386-redhat-linux/4.3.0/../../../crtn.o -Wl,-soname -Wl,libsbml.so.0 -o .libs/libsbml.so.0.0.0
(cd .libs && rm -f libsbml.so.0 && ln -s libsbml.so.0.0.0 libsbml.so.0)
(cd .libs && rm -f libsbml.so && ln -s libsbml.so.0.0.0 libsbml.so)
ar cru .libs/libsbml.a libsbml-version.o ASTNode.o FormulaTokenizer.o List.o
ranlib .libs/libsbml.a
creating libsbml.la
(cd .libs && rm -f libsbml.la && ln -s ../libsbml.la libsbml.la)
make[1]: Leaving directory `/home/internet/mydoc/test_pj/libsbml/src'
Making all in .
make[1]: Entering directory `/home/internet/mydoc/test_pj'
gcc -DPACKAGE_NAME=\"main\" -DPACKAGE_TARNAME=\"main\" -DPACKAGE_VERSION=\"0.1\" -DPACKAGE_STRING=\"main\ 0.1\" -DPACKAGE_BUGREPORT=\"zqiang320@xxxxxxxxx\" -DPACKAGE=\"main\" -DVERSION=\"0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -Isundials/include -Ilibsbml/include -g -O2 -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.c
In file included from sundials/include/sundials/sundials_nvector.h:50,
from sundials/include/cvodes/cvodes.h:41,
from main.c:52:
sundials/include/sundials/sundials_types.h:50:38: error: sundials/sundials_config.h: No such file or directory
In file included from sundials/include/cvodes/cvodes.h:41,
from main.c:52:
sundials/sundials_config.h was in directory in sundials/include, why compiler could not find it by
AM_CPPFLAGS = -Isundials/include
what should I do?
2008-09-25
zqiang320
