I am trying to compile a genetics analysis program ("transmit") on a sun station running SunOS5.9. I believe that it has version 3.2 of c++, and version 3.2 of gcc. There is a Makefile bundled with the program. When I run "make" I get the following error messages:
gruen@/home/gruen/Applications/transmit-2.5.4% make
g++ -c -DVERSION="\"2.5.4, Aug 2002\"" -DSEED=srand48 transmit.C
In file included from /usr/local/include/c++/3.2/backward/iostream.h:31,
from transmit.C:5:
/usr/local/include/c++/3.2/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <sstream> instead of the deprecated header <strstream.h>. To disable this warning use -Wno-deprecated.
g++ -c -DURAN=drand48 transfun.C
In file included from /usr/local/include/c++/3.2/backward/iostream.h:31,
from transfun.C:8:
/usr/local/include/c++/3.2/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <sstream> instead of the deprecated header <strstream.h>. To disable this warning use -Wno-deprecated.
g++ -c cline.c
g++ -c -DURAN=drand48 bstrap.c
g++ -c profile.c
g++ -c stats.c
g++ -c matrix.c
g++ -o transmit transmit.o transfun.o cline.o profile.o matrix.o bstrap.o stats.o
After compiling there is an executable form of the program, but when I try to execute it I get the following error message:
gruen@/home/gruen/Applications/transmit-2.5.4% transmit
ld.so.1: transmit: fatal: libstdc++.so.5: open failed: No such file or directory
Killed
Apparently there was some fatal error in the compiling. I would think that the fatal error is reflected in the warning messages produced during the compiling process (above) regarding a "deprecated or antiquated header".
Could you please offer a suggestion on how to fix this problem?
(I don't know if this is helpful but when I compile on transmit on MacOSX with the same Makefile the program compiles and executes flawlessly. I would prefer, however to use this particular program on our Sun server for group use. I have included the Makefile below.)
Thanks,
Jeff Gruen gruen.lab@xxxxxxxx
Makefile for transmit: gruen@/home/gruen/Applications/transmit-2.5.4% more Makefile VERSION = 2.5.4 DATE = Aug 2002
VER = "\"$(VERSION), $(DATE)\"" CMP = g++ -c CMP_FLAGS = LD = g++ LD_FLAGS = UNIFORM_RANDOM = drand48 RANDOM_SEED = srand48 CMP = g++ -c LD = g++
transmit : transmit.o transfun.o cline.o bstrap.o profile.o stats.o matrix.o
$(LD) $(LD_FLAGS) -o transmit transmit.o transfun.o cline.o profile.o matrix.o bstrap.o stats.o
transmit.o : transmit.C transmit.h cline.h bstrap.h
$(CMP) $(CMP_FLAGS) -DVERSION=$(VER) -DSEED=$(RANDOM_SEED) transmit.C
transfun.o : transfun.C transmit.h
$(CMP) $(CMP_FLAGS) -DURAN=$(UNIFORM_RANDOM) transfun.Ccline.o : cline.c
$(CMP) $(CMP_FLAGS) cline.cprofile.o : profile.c matrix.h
$(CMP) $(CMP_FLAGS) profile.cmatrix.o : matrix.c matrix.h
$(CMP) $(CMP_FLAGS) matrix.cbstrap.o : bstrap.c bstrap.h matrix.h
$(CMP) $(CMP_FLAGS) -DURAN=$(UNIFORM_RANDOM) bstrap.cstats.o : stats.c
$(CMP) $(CMP_FLAGS) stats.cclean :
rm -f *.o *~ transmit-$(VERSION).tar.gz transmit-$(VERSION).zipdistribution:
mkdir transmit-$(VERSION)
cp *.C *.c *.h *.doc test.dat Makefile transmit-$(VERSION)/
rm -f transmit-$(VERSION).tar.gz transmit-$(VERSION).zip
tar cvf transmit-$(VERSION).tar transmit-$(VERSION)/*
gzip transmit-$(VERSION).tar
zip transmit-$(VERSION).zip transmit-$(VERSION)/*
rm -f transmit-$(VERSION)/*