SELinux disabled after installation through Kickstart

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Hello all,

I did a installation through Kickstart and installed a custom kernel; On my kickstart file I explicitly told kickstart to warn about violations but not to enforce:

selinux --permissive

However after the system comes up I can see than SELinux is completely disabled:

[root@X ~]# getenforce 
Disabled

My /etc/selinux/config seems to have the right settings:

SELINUX=permissive
SELINUXTYPE=targeted

Any pointers where I can look up for issues?
Could be my custom kernel who is causing this issue?

I'm learning the ropes with SELinux so any help will be greatly appreciated.

Thanks.
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