Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=472150 --- Comment #3 from Adam Huffman <bloch@xxxxxxxxxxxx> 2008-11-20 06:05:56 EDT --- Have just updated to new mmdb and latest version of refmac-dictionary. There's still a problem building coot: (cd .libs && rm -f libcoot-shelx.so.0 && ln -s libcoot-shelx.so.0.0.0 libcoot-shelx.so.0) (cd .libs && rm -f libcoot-shelx.so && ln -s libcoot-shelx.so.0.0.0 libcoot-shelx.so) creating libcoot-shelx.la (cd .libs && rm -f libcoot-shelx.la && ln -s ../libcoot-shelx.la libcoot-shelx.la) /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fno-strict-aliasing -o testshelxreader test-shelx-reader.o ./libcoot-shelx.la ./libcoot-coord-utils.la ./libcoot-utils.la -lclipper -lsrfftw -lsfftw -lm -lmmdb -lgpp4 -lmmdb /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fno-strict-aliasing -o testcootutils test-utils.o ./libcoot-shelx.la ./libcoot-coord-utils.la ./libcoot-utils.la -lclipper -lsrfftw -lsfftw -lm -lmmdb -lgpp4 -lmmdb g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fno-strict-aliasing -o .libs/testshelxreader test-shelx-reader.o ./.libs/libcoot-shelx.so ./.libs/libcoot-coord-utils.so ./.libs/libcoot-utils.so -lclipper -lsrfftw -lsfftw -lm -lgpp4 -lmmdb g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fno-strict-aliasing -o .libs/testcootutils test-utils.o ./.libs/libcoot-shelx.so ./.libs/libcoot-coord-utils.so ./.libs/libcoot-utils.so -lclipper -lsrfftw -lsfftw -lm -lgpp4 -lmmdb /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBFile::SetSpaceGroup(char*)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBFile::ReadCoorFile(char*, unsigned char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBCoorManager::GetAtom(char*)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFStruct::GetReal(double&, char*, unsigned char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFFile::ReadMMCIFFile(char*, unsigned char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBCoorManager::GetModel(char*)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBFile::WriteMMDBF(char*, unsigned char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFLoop::GetReal(double&, char*, int, unsigned char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBCoorManager::GetResidue(char*)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFData::GetLoop(char*)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFData::GetStructure(char*)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBCoorManager::GetChain(char*)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `FirstOccurence(char*, char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFLoop::GetInteger(int&, char*, int, unsigned char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFLoop::GetString(char*, int, int&)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBFile::WriteCIFASCII(char*, unsigned char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFStruct::GetString(char*, int&)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBFile::WritePDBASCII(char*, unsigned char)' collect2: ld returned 1 exit status make[1]: *** [testshelxreader] Error 1 make[1]: *** Waiting for unfinished jobs.... /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBFile::SetSpaceGroup(char*)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBFile::ReadCoorFile(char*, unsigned char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBCoorManager::GetAtom(char*)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFStruct::GetReal(double&, char*, unsigned char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFFile::ReadMMCIFFile(char*, unsigned char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBCoorManager::GetModel(char*)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBFile::WriteMMDBF(char*, unsigned char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFLoop::GetReal(double&, char*, int, unsigned char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBCoorManager::GetResidue(char*)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFData::GetLoop(char*)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFData::GetStructure(char*)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBCoorManager::GetChain(char*)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `FirstOccurence(char*, char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFLoop::GetInteger(int&, char*, int, unsigned char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFLoop::GetString(char*, int, int&)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBFile::WriteCIFASCII(char*, unsigned char)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMCIFStruct::GetString(char*, int&)' /usr/lib/gcc/x86_64-redhat-linux/4.3.0/../../../../lib64/libclipper.so: undefined reference to `CMMDBFile::WritePDBASCII(char*, unsigned char)' collect2: ld returned 1 exit status make[1]: *** [testcootutils] Error 1 make[1]: Leaving directory `/home/adam/rpmbuild/BUILD/coot-0.5/coot-utils' make: *** [all-recursive] Error 1 error: Bad exit status from /var/tmp/rpm-tmp.53148 (%build) RPM build errors: Bad exit status from /var/tmp/rpm-tmp.53148 (%build) -- Configure bugmail: https://bugzilla.redhat.com/userprefs.cgi?tab=email ------- You are receiving this mail because: ------- You are on the CC list for the bug. _______________________________________________ Fedora-package-review mailing list Fedora-package-review@xxxxxxxxxx http://www.redhat.com/mailman/listinfo/fedora-package-review