Please do not reply directly to this email. All additional comments should be made in the comments box of this bug report. https://bugzilla.redhat.com/show_bug.cgi?id=447559 Summary: Review Request: perl-GO-TermFinder - Identify GO nodes that annotate a group of genes with a significant p- value Product: Fedora Version: rawhide Platform: All OS/Version: Linux Status: NEW Severity: medium Priority: medium Component: Package Review AssignedTo: nobody@xxxxxxxxxxxxxxxxx ReportedBy: kanarip@xxxxxxxxxxx QAContact: extras-qa@xxxxxxxxxxxxxxxxx CC: fedora-package-review@xxxxxxxxxx,notting@xxxxxxxxxx Spec URL: http://pilot.genomicscenter.nl/genomics/SPECS/perl-GO-TermFinder.spec SRPM URL: http://pilot.genomicscenter.nl/genomics/el5/SRPMS/perl-GO-TermFinder-0.82-1.el5.src.rpm Description: This package is intended to provide a method whereby the P-values of a set of GO annotations can be determined for a set of genes, based on the number of genes that exist in the particular genome (or in a selected background distribution from the genome), and their annotation, and the frequency with which the GO nodes are annotated across the provided set of genes. The P-value is simply calculated using the hypergeometric distribution as the probability of x or more out of n genes having a given annotation, given that G of N have that annotation in the genome in general. We chose the hypergeometric distribution (sampling without replacement) since it is more accurate, though slower to calculate, than the binomial distribution (sampling with replacement). Additional Information: This is my first perl package ;-) - Targeted for EL-5, F-8, F-9 and rawhide. See also koji scratch builds: - http://koji.fedoraproject.org/koji/taskinfo?taskID=620022 (dist-f8-updates-candidate) - http://koji.fedoraproject.org/koji/taskinfo?taskID=620032 (dist-f9-updates-candidate) - http://koji.fedoraproject.org/koji/taskinfo?taskID=620080 (dist-f10) -- Configure bugmail: https://bugzilla.redhat.com/userprefs.cgi?tab=email ------- You are receiving this mail because: ------- You are on the CC list for the bug, or are watching someone who is. _______________________________________________ Fedora-package-review mailing list Fedora-package-review@xxxxxxxxxx http://www.redhat.com/mailman/listinfo/fedora-package-review