https://bugzilla.redhat.com/show_bug.cgi?id=2123760 Ben Beasley <code@xxxxxxxxxxxxxxxxxx> changed: What |Removed |Added ---------------------------------------------------------------------------- Flags| |needinfo?(iztok@iztok-jr-fi | |ster.eu) --- Comment #1 from Ben Beasley <code@xxxxxxxxxxxxxxxxxx> --- Package Review ============== Legend: [x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated ===== Issues ===== - It looks like the package is pure Python and can be noarch. You can add BuildArch: noarch to the base package and remove it from the -doc subpackage, and remove %global debug_package %{nil} - You no longer need to number auto-applied patches, so Patch0: 0001-do-not-package-tests-examples.patch can become: Patch: 0001-do-not-package-tests-examples.patch This patch should have a link to an upstream bug or PR, or a comment explaining why it should be downstream-only. https://docs.fedoraproject.org/en-US/packaging-guidelines/#_all_patches_should_have_an_upstream_bug_link_or_comment - The rpmlint message python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/__init__.py 644 /usr/bin/env python points out that files should either be executable or lack shebangs. I filed an upstream PR: https://github.com/thieu1995/opfunu/pull/9 You can apply it as a patch: # Adjust shebangs and executable permissions # https://github.com/thieu1995/opfunu/pull/9 Patch: %{forgeurl}/pull/9.patch or, if upstream does not choose to merge it and you need to carry it downstream across multiple versions without rebasing it all the time, you can do something like this in %prep: # Adjust shebangs and executable permissions # https://github.com/thieu1995/opfunu/pull/9 find examples -type f -name '*.py' ! -name '__init__.py' \ -execdir chmod +x '{}' '+' find opfunu tests -type f -name '*.py' \ -execdir sed -r -i '1{/^#!/d}' '{}' '+' Of course, only the files that are installed actually matter downstream. - For any files that retain shebangs, they must be adjusted to invoke the Python 3 interpreter directly instead of using /usr/bin/env, e.g., in %prep: %py3_shebang_fix examples See: https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/#_shebangs - The rpmlint message python-opfunu.src: E: description-line-too-long Current information can always be found from the repository - https://github.com/thieu1995/opfunu python3-opfunu.x86_64: E: description-line-too-long Current information can always be found from the repository - https://github.com/thieu1995/opfunu correctly notes that the description should be line-wrapped to 80 characters or less. - The rpmlint messages python3-opfunu.x86_64: E: files-duplicated-waste 66750942 python3-opfunu.x86_64: W: files-duplicate /usr/lib/python3.11/site-packages/opfunu/type_based/__init__.py /usr/lib/python3.11/site-packages/opfunu/cec/__init__.py:/usr/lib/python3.11/site-packages/opfunu/dimension_based/__init__.py python3-opfunu.x86_64: W: files-duplicate /usr/lib/python3.11/site-packages/opfunu/cec_based/data_2005/E_ScafferF6_M_D10.txt /usr/lib/python3.11/site-packages/opfunu/cec/cec2005/support_data/E_ScafferF6_M_D10.txt and many more similar messages correctly note that a huge number of the .txt data files actually have identical contents. We can make the RPM *and* the installed package much smaller by hardlinking duplicate files together. This will not reduce the number of rpmlint messages, since it will warn about cross-directory hardlinks. This is because, in general, directories can be on different filesystems, and hardlinks cannot cross filesystems. However, in this case all of the hardlinks will be under the same package-owned directory, so we can guarantee that they are on the same filesystem. Add: BuildRequires: hardlink and at the end of the %install section, add: hardlink '%{buildroot}%{python3_sitelib}/opfunu' This reduces the installed size by ~64MiB and the compressed RPM size by over 7MiB. - The Source0 URL is incorrect because of %global tag %{version} where the actual tag is “v1.0.0”. You could write %global tag v%{version} or just remove the line altogether since that is the default. - The package unconditionally imports pandas and scipy, so it should have a runtime dependency on them. The pandas dependency was added in the two commits after the 1.0.0 release: # Backport two upstream commits adding a dependency on pandas, which is # unconditionally imported. Patch: %{forgeurl}/commit/0f061419cdeaf88844f073ef723d3c37c53f4b5e.patch Patch: %{forgeurl}/commit/5de9f8110a201a3dbd79fbcc65c031f56bd17f2b.patch Then you can apply the scipy PR downstream: # Add missing scipy dependency # https://github.com/thieu1995/opfunu/pull/8 Patch: %{forgeurl}/pull/8.patch Then you can drop these, since the BR’s will now be generated… BuildRequires: %{py3_dist pandas} BuildRequires: %{py3_dist scipy} …and this was already unnecessary for the same reason: BuildRequires: %{py3_dist numpy} That leaves: BuildRequires: %{py3_dist requests} This, too, should be added to the install_requires. Without patching, you could add Requires: %{py3_dist requests} but it would probably be better to add it to your PR#8, https://github.com/thieu1995/opfunu/pull/8. Finally, opfunu.utils.visualize, which is the part of the code that imports matplotlib and requests, also directly imports PIL/Pillow. Therefore, you need BuildRequires: %{py3_dist Pillow} Requires: %{py3_dist Pillow} or, again, to add the dependency in your PR. Either way upstream should be notified about the missing requests and pillow dependencies. All of these recommended patches (PR#9, then the two commits, then PR#8) should apply cleanly, but you will have to rebase your 0001-do-not-package-tests-examples.patch to apply cleanly on top of them at the end, because both it and PR#8 try to fix the missing newline at the end of setup.py. diff -Naur opfunu-1.0.0-original/setup.py opfunu-1.0.0/setup.py --- opfunu-1.0.0-original/setup.py 2022-09-07 07:46:50.092083573 -0400 +++ opfunu-1.0.0/setup.py 2022-09-07 07:47:18.058452407 -0400 @@ -23,7 +23,7 @@ long_description_content_type="text/markdown", url="https://github.com/thieu1995/opfunu";, download_url="https://github.com/thieu1995/opfunu/archive/v1.0.0.zip";, - packages=find_packages(), + packages=find_packages(exclude=("*tests.*", "*tests", "*examples.*", "*examples")), include_package_data=True, license="MIT", classifiers=[ - Since we know this project has had missing dependencies and the tests do not cover the visualize module, it might not hurt to add an unconditional %pyproject_check_import to the %check section even though you are running the tests, so it’s not strictly required. ===== MUST items ===== Generic: [x]: Package is licensed with an open-source compatible license and meets other legal requirements as defined in the legal section of Packaging Guidelines. [x]: License field in the package spec file matches the actual license. Note: Checking patched sources after %prep for licenses. Licenses found: "Unknown or generated", "*No copyright* GNU General Public License, Version 3". 1861 files have unknown license. Detailed output of licensecheck in /home/reviewer/2123760-python- opfunu/licensecheck.txt [x]: License file installed when any subpackage combination is installed. $ rpm -qL -p results/python3-opfunu-1.0.0-1.fc38.x86_64.rpm /usr/lib/python3.11/site-packages/opfunu-1.0.0.dist-info/LICENSE $ rpm -qL -p results/python-opfunu-doc-1.0.0-1.fc38.noarch.rpm /usr/share/licenses/python-opfunu-doc/LICENSE [-]: %build honors applicable compiler flags or justifies otherwise. [x]: Package contains no bundled libraries without FPC exception. [x]: Changelog in prescribed format. [x]: Sources contain only permissible code or content. [-]: Package contains desktop file if it is a GUI application. [-]: Development files must be in a -devel package [x]: Package uses nothing in %doc for runtime. [x]: Package consistently uses macros (instead of hard-coded directory names). [x]: Package is named according to the Package Naming Guidelines. [x]: Package does not generate any conflict. [x]: Package obeys FHS, except libexecdir and /usr/target. [-]: If the package is a rename of another package, proper Obsoletes and Provides are present. [x]: Requires correct, justified where necessary. [x]: Spec file is legible and written in American English. [-]: Package contains systemd file(s) if in need. [-]: Useful -debuginfo package or justification otherwise. [x]: Package is not known to require an ExcludeArch tag. [x]: Large documentation must go in a -doc subpackage. Large could be size (~1MB) or number of files. Note: Documentation size is 92160 bytes in 19 files. [x]: Package complies to the Packaging Guidelines (except as noted) [x]: Package successfully compiles and builds into binary rpms on at least one supported primary architecture. [x]: Package installs properly. [x]: Rpmlint is run on all rpms the build produces. Note: There are rpmlint messages (see attachment). [x]: If (and only if) the source package includes the text of the license(s) in its own file, then that file, containing the text of the license(s) for the package is included in %license. [x]: Package requires other packages for directories it uses. [x]: Package must own all directories that it creates. [x]: Package does not own files or directories owned by other packages. [x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT [x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the beginning of %install. [x]: Macros in Summary, %description expandable at SRPM build time. [x]: Dist tag is present. [x]: Package does not contain duplicates in %files. [x]: Permissions on files are set properly. [x]: Package must not depend on deprecated() packages. [x]: Package use %makeinstall only when make install DESTDIR=... doesn't work. [x]: Package is named using only allowed ASCII characters. [x]: Package does not use a name that already exists. [x]: Package is not relocatable. [x]: Sources used to build the package match the upstream source, as provided in the spec URL. [x]: Spec file name must match the spec package %{name}, in the format %{name}.spec. [x]: File names are valid UTF-8. [x]: Packages must not store files under /srv, /opt or /usr/local Python: [x]: Python eggs must not download any dependencies during the build process. [x]: A package which is used by another package via an egg interface should provide egg info. [x]: Package meets the Packaging Guidelines::Python (except as noted) [x]: Package contains BR: python2-devel or python3-devel [x]: Packages MUST NOT have dependencies (either build-time or runtime) on packages named with the unversioned python- prefix unless no properly versioned package exists. Dependencies on Python packages instead MUST use names beginning with python2- or python3- as appropriate. [x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files [x]: Binary eggs must be removed in %prep ===== SHOULD items ===== Generic: [!]: Sources can be downloaded from URI in Source: tag Note: Could not download Source0: https://github.com/thieu1995/opfunu/archive/1.0.0/opfunu-1.0.0.tar.gz See: https://docs.fedoraproject.org/en-US/packaging- guidelines/SourceURL/ [-]: If the source package does not include license text(s) as a separate file from upstream, the packager SHOULD query upstream to include it. [!]: Final provides and requires are sane (see attachments). Should depend on python3dist(requests), python3dist(scipy), python3dist(pillow). See Issues section. [-]: Fully versioned dependency in subpackages if applicable. Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in python3-opfunu [x]: Package functions as described. (based on tests passing) [x]: Latest version is packaged. [x]: Package does not include license text files separate from upstream. [!]: Patches link to upstream bugs/comments/lists or are otherwise justified. [x]: SourceX tarball generation or download is documented. Note: Package contains tarball without URL, check comments (however, URL needs to be fixed; see Issues) [-]: Sources are verified with gpgverify first in %prep if upstream publishes signatures. Note: gpgverify is not used. [x]: Package should compile and build into binary rpms on all supported architectures. [x]: %check is present and all tests pass. [x]: Packages should try to preserve timestamps of original installed files. [x]: Reviewer should test that the package builds in mock. [x]: Buildroot is not present [x]: Package has no %clean section with rm -rf %{buildroot} (or $RPM_BUILD_ROOT) [x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin. [x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file [!]: SourceX is a working URL. [x]: Spec use %global instead of %define unless justified. ===== EXTRA items ===== Generic: [x]: Rpmlint is run on all installed packages. Note: There are rpmlint messages (see attachment). W: patch-not-applied Patch0: 0001-do-not-package-tests-examples.patch OK: rpmlint is confused by %forgeautosetup W: invalid-license GPL-3.0 OK: rpmlint does not know about SPDX yet python-opfunu-doc.noarch: W: description-shorter-than-summary OK: the actual contents of the summary and description are reasonable [x]: Large data in /usr/share should live in a noarch subpackage if package is arched. [x]: Spec file according to URL is the same as in SRPM. Rpmlint ------- Cannot parse rpmlint output: Rpmlint (installed packages) ---------------------------- Cannot parse rpmlint output: Requires -------- python3-opfunu (rpmlib, GLIBC filtered): python(abi) python3.11dist(matplotlib) python3.11dist(numpy) python-opfunu-doc (rpmlib, GLIBC filtered): Provides -------- python3-opfunu: python-opfunu python3-opfunu python3-opfunu(x86-64) python3.11-opfunu python3.11dist(opfunu) python3dist(opfunu) python-opfunu-doc: python-opfunu-doc Generated by fedora-review 0.8.0 (e988316) last change: 2022-04-07 Command line :/usr/bin/fedora-review -b 2123760 Buildroot used: fedora-rawhide-x86_64 Active plugins: Generic, Shell-api, Python Disabled plugins: Haskell, R, C/C++, SugarActivity, PHP, Ocaml, Perl, fonts, Java Disabled flags: EPEL6, EPEL7, DISTTAG, BATCH, EXARCH ============================ rpmlint session starts ============================ rpmlint: 2.2.0 configuration: /usr/lib/python3.10/site-packages/rpmlint/configdefaults.toml /etc/xdg/rpmlint/fedora.toml /etc/xdg/rpmlint/licenses.toml /etc/xdg/rpmlint/scoring.toml /etc/xdg/rpmlint/users-groups.toml /etc/xdg/rpmlint/warn-on-functions.toml checks: 32, packages: 3 python-opfunu.spec: W: patch-not-applied Patch0: 0001-do-not-package-tests-examples.patch python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/__init__.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/benchmark.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/__init__.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2005/F1.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2005/F10.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script 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python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2005/root.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2008/F1.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2008/F2.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2008/F3.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2008/F4.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2008/F5.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2008/F6.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2008/F7.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2008/__init__.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2008/root.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2010/__init__.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2010/function.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2010/utils.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script /usr/lib/python3.11/site-packages/opfunu/cec/cec2013/__init__.py 644 /usr/bin/env python python3-opfunu.x86_64: E: non-executable-script 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