[Bug 2016786] Review Request: python-pypesto - A widely applicable and highly customizable toolbox for parameter estimation

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https://bugzilla.redhat.com/show_bug.cgi?id=2016786



--- Comment #7 from AFOLABI, OLUYOSOLA ELIZABETH <afolabioluyosola@xxxxxxxxx> ---
(In reply to Ankur Sinha (FranciscoD) from comment #6)
> Looks very good. A couple of issues (please see below for full explanations):
> 
> - please correct the changelog
> - please update to use the latest version
> 
> Package Review
> ==============
> 
> Legend:
> [x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
> [ ] = Manual review needed
> 
> 
> ===== MUST items =====
> 
> Generic:
> [x]: Package is licensed with an open-source compatible license and meets
>      other legal requirements as defined in the legal section of Packaging
>      Guidelines.
> [x]: License field in the package spec file matches the actual license.
>      Note: Checking patched sources after %prep for licenses. Licenses
>      found: "Unknown or generated", "BSD 3-Clause License". 213 files have
>      unknown license. Detailed output of licensecheck in
>      /home/asinha/2016786-python-pypesto/licensecheck.txt
> [x]: Package contains no bundled libraries without FPC exception.
> [!]: Changelog in prescribed format.
> ^
> - Please remove "for python-pypesto" from the changelog
> - Note that you can also use %autochangelog if you wish.
> 
> [x]: Sources contain only permissible code or content.
> [-]: Package contains desktop file if it is a GUI application.
> [-]: Development files must be in a -devel package
> [x]: Package uses nothing in %doc for runtime.
> [x]: Package consistently uses macros (instead of hard-coded directory
>      names).
> [x]: Package is named according to the Package Naming Guidelines.
> [x]: Package does not generate any conflict.
> [x]: Package obeys FHS, except libexecdir and /usr/target.
> [-]: If the package is a rename of another package, proper Obsoletes and
>      Provides are present.
> [x]: Requires correct, justified where necessary.
> [x]: Spec file is legible and written in American English.
> [-]: Package contains systemd file(s) if in need.
> [x]: Package is not known to require an ExcludeArch tag.
> [-]: Large documentation must go in a -doc subpackage. Large could be size
>      (~1MB) or number of files.
>      Note: Documentation size is 10240 bytes in 1 files.
> [x]: Package complies to the Packaging Guidelines
> [x]: Package successfully compiles and builds into binary rpms on at least
>      one supported primary architecture.
> [x]: Package installs properly.
> [x]: Rpmlint is run on all rpms the build produces.
>      Note: There are rpmlint messages (see attachment).
> [x]: If (and only if) the source package includes the text of the
>      license(s) in its own file, then that file, containing the text of the
>      license(s) for the package is included in %license.
> 
> ^
> rpm -ql -p ./python3-pypesto-0.2.7-1.fc36.noarch.rpm  --licensefiles
> /usr/lib/python3.10/site-packages/pypesto-0.2.7.dist-info/LICENSE
> 
> 
> [x]: Package requires other packages for directories it uses.
> [x]: Package must own all directories that it creates.
> [x]: Package does not own files or directories owned by other packages.
> [x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
> [x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
>      beginning of %install.
> [x]: Macros in Summary, %description expandable at SRPM build time.
> [x]: Dist tag is present.
> [x]: Package does not contain duplicates in %files.
> [x]: Permissions on files are set properly.
> [x]: Package must not depend on deprecated() packages.
> [x]: Package use %makeinstall only when make install DESTDIR=... doesn't
>      work.
> [x]: Package is named using only allowed ASCII characters.
> [x]: Package does not use a name that already exists.
> [x]: Package is not relocatable.
> [x]: Sources used to build the package match the upstream source, as
>      provided in the spec URL.
> [x]: Spec file name must match the spec package %{name}, in the format
>      %{name}.spec.
> [x]: File names are valid UTF-8.
> [x]: Packages must not store files under /srv, /opt or /usr/local
> 
> Python:
> [x]: Python eggs must not download any dependencies during the build
>      process.
> [x]: A package which is used by another package via an egg interface should
>      provide egg info.
> [x]: Package meets the Packaging Guidelines::Python
> [x]: Package contains BR: python2-devel or python3-devel
> [x]: Packages MUST NOT have dependencies (either build-time or runtime) on
>      packages named with the unversioned python- prefix unless no properly
>      versioned package exists. Dependencies on Python packages instead MUST
>      use names beginning with python2- or python3- as appropriate.
> [x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files
> [x]: Binary eggs must be removed in %prep
> 
> ===== SHOULD items =====
> 
> Generic:
> [-]: If the source package does not include license text(s) as a separate
>      file from upstream, the packager SHOULD query upstream to include it.
> [x]: Final provides and requires are sane (see attachments).
> [x]: Package functions as described.
> ^
> Package imports correctly, so this should be OK.
> 
> [!]: Latest version is packaged.
> ^
> They released 0.2.8 a few days ago, so we should use that.
> 
> [x]: Package does not include license text files separate from upstream.
> [-]: Sources are verified with gpgverify first in %prep if upstream
>      publishes signatures.
>      Note: gpgverify is not used.
> [-]: Description and summary sections in the package spec file contains
>      translations for supported Non-English languages, if available.
> [x]: Package should compile and build into binary rpms on all supported
>      architectures.
> [x]: %check is present and all tests pass.
> ^
> Note that the tests use some optional packages that aren't in Fedora yet, so
> we use the simple import check.
> 
> [x]: Packages should try to preserve timestamps of original installed
>      files.
> [x]: Reviewer should test that the package builds in mock.
> [x]: Buildroot is not present
> [x]: Package has no %clean section with rm -rf %{buildroot} (or
>      $RPM_BUILD_ROOT)
> [x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
> [x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
> [x]: Sources can be downloaded from URI in Source: tag
> [x]: SourceX is a working URL.
> [x]: Spec use %global instead of %define unless justified.
> 
> ===== EXTRA items =====
> 
> Generic:
> [x]: Rpmlint is run on all installed packages.
>      Note: There are rpmlint messages (see attachment).
> [x]: Spec file according to URL is the same as in SRPM.
> 
> 
> Rpmlint
> -------
> 
> rpmlint *rpm ../srpm-unpacked/python-pypesto.spec
> ======================================================== rpmlint session
> starts ========================================================
> rpmlint: 2.1.0
> configuration:
>     /usr/lib/python3.10/site-packages/rpmlint/configdefaults.toml
>     /etc/xdg/rpmlint/fedora.toml
>     /etc/xdg/rpmlint/licenses.toml
>     /etc/xdg/rpmlint/scoring.toml
>     /etc/xdg/rpmlint/users-groups.toml
>     /etc/xdg/rpmlint/warn-on-functions.toml
> checks: 31, packages: 3
> 
> ========================= 2 packages and 1 specfiles checked; 0 errors, 0
> warnings, 0 badness; has taken 1.7 s =========================
> 
> 
> Rpmlint (installed packages)
> ----------------------------
> Cannot parse rpmlint output:
> 
> 
> Source checksums
> ----------------
> https://github.com/ICB-DCM/pyPESTO/archive/v0.2.7/python-pypesto-0.2.7.tar.
> gz :
>   CHECKSUM(SHA256) this package     :
> c28c2235a9e3a9b536077c7b3a9b405ab71bfa6f2a11e0a7e292c57a08ef7dfc
>   CHECKSUM(SHA256) upstream package :
> c28c2235a9e3a9b536077c7b3a9b405ab71bfa6f2a11e0a7e292c57a08ef7dfc
> 
> 
> Requires
> --------
> python3-pypesto (rpmlib, GLIBC filtered):
>     python(abi)
>     python3.10dist(cloudpickle)
>     python3.10dist(h5py)
>     python3.10dist(matplotlib)
>     python3.10dist(numpy)
>     python3.10dist(pandas)
>     python3.10dist(scipy)
>     python3.10dist(seaborn)
>     python3.10dist(tqdm)
> 
> 
> 
> Provides
> --------
> python3-pypesto:
>     python-pypesto
>     python3-pypesto
>     python3.10-pypesto
>     python3.10dist(pypesto)
>     python3dist(pypesto)
> 
> 
> 
> Generated by fedora-review 0.7.6 (b083f91) last change: 2020-11-10
> Command line :/usr/bin/fedora-review -b 2016786
> Buildroot used: fedora-rawhide-x86_64
> Active plugins: Shell-api, Generic, Python
> Disabled plugins: Perl, Ocaml, SugarActivity, R, Haskell, fonts, PHP, Java,
> C/C++
> Disabled flags: EPEL6, EPEL7, DISTTAG, BATCH, EXARCH


Thanks, I will go ahead and make the changes.


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