https://bugzilla.redhat.com/show_bug.cgi?id=2012917 Bug ID: 2012917 Summary: Review Request: python-probeinterface - Handles probe layout, geometry, and wiring to device Product: Fedora Version: rawhide Hardware: All OS: Linux Status: NEW Component: Package Review Severity: medium Priority: medium Assignee: nobody@xxxxxxxxxxxxxxxxx Reporter: code@xxxxxxxxxxxxxxxxxx QA Contact: extras-qa@xxxxxxxxxxxxxxxxx CC: package-review@xxxxxxxxxxxxxxxxxxxxxxx Target Milestone: --- Classification: Fedora Spec URL: https://music.fedorapeople.org/python-probeinterface.spec SRPM URL: https://music.fedorapeople.org/python-probeinterface-0.2.5-1.fc34.src.rpm Description: A Python package to handle the layout, geometry, and wiring of silicon probes for extracellular electrophysiology experiments. Goals Make a lightweight package to handle: • probe contact geometry (both 2D and 3D layouts) • probe shape (contour of the probe, shape of channel contact, …) • probe wiring to device (the physical layout often doesn’t match the channel ordering) • combining several probes into a device with global geometry + global wiring • exporting probe geometry data into JSON files • loading existing probe geometry files (Neuronexus, imec, Cambridge Neurotech…) Started here Bonus: • optional plotting (based on matplotlib) • load/save geometry using common formats (PRB, CSV, NWB, …) • handle SI length units correctly um/mm/… Target users/project: • spikeinterface team: integrate this into spikeextractor for channel location • neo team: handle array_annotations for AnalogSignal • spikeforest team: use this package for plotting probe activity • phy team: integrate for probe display • spyking-circus team: handle probe with this package • kilosort team: handle probe with this package • tridesclous team: handle probe with this package • open ephys team: automatically generate channel map configuration files Fedora Account System Username: music Koji scratch builds: F36: https://koji.fedoraproject.org/koji/taskinfo?taskID=77076410 F35: https://koji.fedoraproject.org/koji/taskinfo?taskID=77076411 F34: https://koji.fedoraproject.org/koji/taskinfo?taskID=77076413 F33: https://koji.fedoraproject.org/koji/taskinfo?taskID=77076414 This is a dependency for python-spikeinterface (https://pagure.io/neuro-sig/NeuroFedora/issue/473), and @neuro-sig will have commit privileges. -- You are receiving this mail because: You are always notified about changes to this product and component You are on the CC list for the bug. https://bugzilla.redhat.com/show_bug.cgi?id=2012917 _______________________________________________ package-review mailing list -- package-review@xxxxxxxxxxxxxxxxxxxxxxx To unsubscribe send an email to package-review-leave@xxxxxxxxxxxxxxxxxxxxxxx Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-review@xxxxxxxxxxxxxxxxxxxxxxx Do not reply to spam on the list, report it: https://pagure.io/fedora-infrastructure
