[Bug 1821189] Package Review: Snakemake - Workflow management system to create reproducible and scalable data analyses

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https://bugzilla.redhat.com/show_bug.cgi?id=1821189

Hirotaka Wakabayashi <hiwkby@xxxxxxxxx> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
           Assignee|hiwkby@xxxxxxxxx            |aniketpradhan1999@xxxxxxxxx
              Flags|fedora-review?              |fedora-review+



--- Comment #9 from Hirotaka Wakabayashi <hiwkby@xxxxxxxxx> ---
Hello Aniket, Package APPROVED. Please see the review for details.

Best Regards,
Hirotaka Wakabayashi

```
Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed


Issues:
=======

- The packages doesn't install properly because the 
  python3.9dist(connection-pool) and python3.9dist(stopit) don't exist.
  I installed them locally with --nodeps and reviewed them.

===== MUST items =====

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
[x]: License file installed when any subpackage combination is installed.
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[-]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Package is not known to require an ExcludeArch tag.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 10240 bytes in 1 files.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package must not depend on deprecated() packages.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local

Python:
[x]: Python eggs must not download any dependencies during the build
     process.
[?]: A package which is used by another package via an egg interface should
     provide egg info.
[x]: Package meets the Packaging Guidelines::Python
[x]: Package contains BR: python2-devel or python3-devel
[x]: Packages MUST NOT have dependencies (either build-time or runtime) on
     packages named with the unversioned python- prefix unless no properly
     versioned package exists. Dependencies on Python packages instead MUST
     use names beginning with python2- or python3- as appropriate.
[x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files
[x]: Binary eggs must be removed in %prep

===== SHOULD items =====

Generic:
[-]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[?]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[!]: Sources are verified with gpgverify first in %prep if upstream
     publishes signatures.
[x]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[-]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed
     files.
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Fully versioned dependency in subpackages if applicable.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Uses parallel make %{?_smp_mflags} macro.
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on all installed packages.
[x]: Spec file according to URL is the same as in SRPM.

Rpmlint
-------
Checking: snakemake-6.4.1-1.fc34.noarch.rpm
          snakemake-doc-6.4.1-1.fc34.noarch.rpm
          snakemake-6.4.1-1.fc34.src.rpm
snakemake.noarch: W: spelling-error Summary(en_US) Workflow -> Work flow,
Work-flow, Workforce
snakemake.noarch: W: spelling-error %description -l en_US workflow -> work
flow, work-flow, workforce
snakemake.noarch: W: spelling-error %description -l en_US Workflows -> Work
flows, Work-flows, Workloads
snakemake.noarch: W: spelling-error %description -l en_US workflows -> work
flows, work-flows, workloads
snakemake.noarch: W: no-manual-page-for-binary snakemake
snakemake.noarch: W: no-manual-page-for-binary snakemake-bash-completion
snakemake-doc.noarch: W: spelling-error Summary(en_US) Workflow -> Work flow,
Work-flow, Workforce
snakemake-doc.noarch: W: spelling-error %description -l en_US workflow -> work
flow, work-flow, workforce
snakemake-doc.noarch: W: spelling-error %description -l en_US Workflows -> Work
flows, Work-flows, Workloads
snakemake-doc.noarch: W: spelling-error %description -l en_US workflows -> work
flows, work-flows, workloads
snakemake-doc.noarch: W: hidden-file-or-dir
/usr/share/doc/snakemake-doc/html/.buildinfo
snakemake-doc.noarch: W: wrong-file-end-of-line-encoding
/usr/share/doc/snakemake-doc/html/_static/theme.css
snakemake.src: W: spelling-error Summary(en_US) Workflow -> Work flow,
Work-flow, Workforce
snakemake.src: W: spelling-error %description -l en_US workflow -> work flow,
work-flow, workforce
snakemake.src: W: spelling-error %description -l en_US Workflows -> Work flows,
Work-flows, Workloads
snakemake.src: W: spelling-error %description -l en_US workflows -> work flows,
work-flows, workloads
snakemake.src:109: W: mixed-use-of-spaces-and-tabs (spaces: line 14, tab: line
109)
3 packages and 0 specfiles checked; 0 errors, 17 warnings.

Source checksums
----------------
https://github.com/snakemake/snakemake/archive/v6.4.1/snakemake-6.4.1.tar.gz :
  CHECKSUM(SHA256) this package     :
72faf85cf99dc3a4975dbc9c61ab2e9f3e3490a6048897d92ab3c41e9fab7c89
  CHECKSUM(SHA256) upstream package :
72faf85cf99dc3a4975dbc9c61ab2e9f3e3490a6048897d92ab3c41e9fab7c89


Requires
--------
snakemake (rpmlib, GLIBC filtered):
    /usr/bin/python3
    python(abi)
    python3.9dist(appdirs)
    python3.9dist(configargparse)
    python3.9dist(connection-pool)
    python3.9dist(datrie)
    python3.9dist(docutils)
    python3.9dist(filelock)
    python3.9dist(gitpython)
    python3.9dist(jsonschema)
    python3.9dist(nbformat)
    python3.9dist(psutil)
    python3.9dist(pulp)
    python3.9dist(pyyaml)
    python3.9dist(ratelimiter)
    python3.9dist(requests)
    python3.9dist(setuptools)
    python3.9dist(smart-open)
    python3.9dist(stopit)
    python3.9dist(toposort)
    python3.9dist(wrapt)
    python3dist(smart-open)

snakemake-doc (rpmlib, GLIBC filtered):



Provides
--------
snakemake:
    python3.9dist(snakemake)
    python3dist(snakemake)
    snakemake

snakemake-doc:
    snakemake-doc



Generated by fedora-review 0.7.6 (b083f91) last change: 2020-11-10
Command line :/usr/bin/fedora-review -n snakemake -m
/etc/mock/fedora-34-x86_64.cfg
Buildroot used: fedora-34-x86_64
Active plugins: Shell-api, Python, Generic
Disabled plugins: PHP, Haskell, Perl, C/C++, R, Ocaml, SugarActivity, Java,
fonts
Disabled flags: EPEL6, EPEL7, DISTTAG, BATCH, EXARCH
```


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