https://bugzilla.redhat.com/show_bug.cgi?id=1474958 --- Comment #11 from Christoph Junghans <junghans@xxxxxxxxx> --- (In reply to Antonio Trande from comment #10) > (In reply to Christoph Junghans from comment #9) > > (In reply to Antonio Trande from comment #8) > > > Okay. > > > > > > - Another issue: MPI libraries and binary files are not compiled with > > > related MPI compilers. Use > > > > > > export CC=mpicc > > > export CXX=mpicxx > > > export FC=mpif90 > > > export F77=mpif77 > > > > > > before running '%cmake ...' commands; so > > > > > > cd openmpi > > > %{_openmpi_load} > > > export CC=mpicc > > > export CXX=mpicxx > > > export FC=mpif90 > > > export F77=mpif77 > > > %{cmake3} \ > > > %{defopts} \ > > > -DENABLE_MPI=ON \ > > > -DENABLE_MPIIO=ON \ > > > -DCMAKE_INSTALL_BINDIR=$MPI_BIN \ > > > -DCMAKE_INSTALL_LIBDIR=$MPI_LIB \ > > > ../cmake > > > %make_build > > > %{_openmpi_unload} > > > cd .. > > I think that is not needed, LAMMPS's cmake uses find_package(MPI) and then > > injects the MPI include dir (e.g. -I/usr/include/openmpi-x86_64) and the MPI > > library (e.g. /usr/lib64/openmpi/lib/libmpi_cxx.so) automatically. > > > > > > > Yes, instead. > Check, for example, the MPIs 'lmp' dependencies and you'll see that they're > not correctly linked to the MPI libraries. Where do you see that? In build.log (from https://kojipkgs.fedoraproject.org//work/tasks/5046/21245046/build.log), it says: [100%] Linking CXX executable lmp /usr/bin/cmake -E cmake_link_script CMakeFiles/lmp.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/lmp.dir/builddir/build/BUILD/lammps-patch_11Aug2017/src/main.cpp.o -o lmp -Wl,-rpath,/builddir/build/BUILD/lammps-patch_11Aug2017/openmpi:/usr/lib64/openmpi/lib: liblammps.so.0 /usr/lib64/openmpi/lib/libmpi_cxx.so /usr/lib64/openmpi/lib/libmpi.so -lfftw3 -lpython3.6m -ljpeg -lpng -lz -lm (for openmpi) [100%] Linking CXX executable lmp /usr/bin/cmake -E cmake_link_script CMakeFiles/lmp.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/lmp.dir/builddir/build/BUILD/lammps-patch_11Aug2017/src/main.cpp.o -o lmp -Wl,-rpath,/builddir/build/BUILD/lammps-patch_11Aug2017/mpich:/usr/lib64/mpich/lib: liblammps.so.0 /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so -lfftw3 -lpython3.6m -ljpeg -lpng -lz -lm (for mpich) -- You are receiving this mail because: You are on the CC list for the bug. You are always notified about changes to this product and component _______________________________________________ package-review mailing list -- package-review@xxxxxxxxxxxxxxxxxxxxxxx To unsubscribe send an email to package-review-leave@xxxxxxxxxxxxxxxxxxxxxxx
