[Bug 1297514] Review Request: python3-numpy - A fast multidimensional array facility for Python 3

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https://bugzilla.redhat.com/show_bug.cgi?id=1297514



--- Comment #9 from Denis Fateyev <denis@xxxxxxxxxxx> ---
Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed


===== MUST items =====

C/C++:
[x]: Package does not contain kernel modules.
[x]: Package contains no static executables.
[x]: Header files in -devel subpackage, if present.
[x]: Package does not contain any libtool archives (.la)
[x]: Rpath absent or only used for internal libs.

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[!]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "PSF (v2)", "MIT/X11 (BSD like)", "BSD (2 clause) MIT/X11 (BSD
     like)", "Unknown or generated", "BSD (2 clause)". 639 files have
     unknown license. Detailed output of licensecheck in
     /home/mock/sandbox/review/1297514-python3-numpy/licensecheck.txt
[!]: If the package is under multiple licenses, the licensing breakdown
     must be documented in the spec.
[x]: Package does not own files or directories owned by other packages.
[x]: %build honors applicable compiler flags or justifies otherwise.
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[-]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[!]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Useful -debuginfo package or justification otherwise.
[x]: Package is not known to require an ExcludeArch tag.
[-]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 20480 bytes in 5 files.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: No rpmlint messages.
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: All build dependencies are listed in BuildRequires, except for any
     that are listed in the exceptions section of Packaging Guidelines.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local

Python:
[x]: Python eggs must not download any dependencies during the build
     process.
[x]: A package which is used by another package via an egg interface should
     provide egg info.
[x]: Package meets the Packaging Guidelines::Python
[x]: Binary eggs must be removed in %prep

===== SHOULD items =====

Generic:
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[x]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[-]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[x]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed
     files.
[x]: Sources can be downloaded from URI in Source: tag
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on debuginfo package(s).
     Note: No rpmlint messages.
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Large data in /usr/share should live in a noarch subpackage if package
     is arched.
[x]: Spec file according to URL is the same as in SRPM.


Separate "python34-numpy-1.10.4-3.el7.centos.x86_64.rpm" and
"python34-numpy-f2py-1.10.4-3.el7.centos.x86_64.rpm" checks:
---------------------------------------------------------
 Rpmlint:
 --------

python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/npy_interrupt.h
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/distutils/system_info.py 644 /bin/env
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/distutils/tests/pyrex_ext/setup.py 644
/usr/bin/env
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/__multiarray_api.h
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/distutils/exec_command.py 644
/usr/bin/env
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/utils.h
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/_numpyconfig.h
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/ma/setup.py 644 /usr/bin/env
python34-numpy.x86_64: E: non-standard-executable-perm
/usr/lib64/python3.4/site-packages/numpy/core/operand_flag_tests.cpython-34m.so
775
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/npy_os.h
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/npy_no_deprecated_api.h
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/distutils/conv_template.py 644
/usr/bin/python
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/distutils/tests/setup.py 644
/usr/bin/env
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/ufuncobject.h
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/ma/bench.py 644 /usr/bin/env
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/testing/setup.py 644 /usr/bin/env
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/testing/print_coercion_tables.py 644
/usr/bin/env
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/arrayobject.h
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/distutils/tests/swig_ext/src/zoo.h
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/lib/libnpymath.a
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/fft/tests/test_helper.py 644
/usr/bin/env
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/ndarraytypes.h
python34-numpy.x86_64: E: non-standard-executable-perm
/usr/lib64/python3.4/site-packages/numpy/core/umath.cpython-34m.so 775
python34-numpy.x86_64: E: non-standard-executable-perm
/usr/lib64/python3.4/site-packages/numpy/core/umath_tests.cpython-34m.so 775
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/distutils/from_template.py 644
/usr/bin/python
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/npy_math.h
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/matrixlib/setup.py 644 /usr/bin/env
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/distutils/tests/gen_ext/setup.py 644
/usr/bin/env
python34-numpy.x86_64: E: non-standard-executable-perm
/usr/lib64/python3.4/site-packages/numpy/core/test_rational.cpython-34m.so 775
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/distutils/tests/f2py_f90_ext/setup.py
644 /usr/bin/env
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/noprefix.h
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/numpyconfig.h
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/distutils/mingw/gfortran_vs2003_hack.c
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/random/randomkit.h
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/distutils/cpuinfo.py 644 /usr/bin/env
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/distutils/setup.py 644 /usr/bin/env
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/old_defines.h
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/distutils/tests/swig_ext/setup.py 644
/usr/bin/env
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/ndarrayobject.h
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/npy_3kcompat.h
python34-numpy.x86_64: E: non-standard-executable-perm
/usr/lib64/python3.4/site-packages/numpy/core/multiarray.cpython-34m.so 775
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/compat/setup.py 644 /usr/bin/env
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/core/tests/test_arrayprint.py 644
/usr/bin/python
python34-numpy.x86_64: E: non-standard-executable-perm
/usr/lib64/python3.4/site-packages/numpy/core/struct_ufunc_test.cpython-34m.so
775
python34-numpy.x86_64: E: non-standard-executable-perm
/usr/lib64/python3.4/site-packages/numpy/core/multiarray_tests.cpython-34m.so
775
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/npy_endian.h
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/npy_common.h
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/setup.py 644 /usr/bin/env
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/halffloat.h
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/oldnumeric.h
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/_neighborhood_iterator_imp.h
python34-numpy.x86_64: E: non-standard-executable-perm
/usr/lib64/python3.4/site-packages/numpy/random/mtrand.cpython-34m.so 775
python34-numpy.x86_64: E: non-standard-executable-perm
/usr/lib64/python3.4/site-packages/numpy/core/_dummy.cpython-34m.so 775
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/npy_cpu.h
python34-numpy.x86_64: E: non-standard-executable-perm
/usr/lib64/python3.4/site-packages/numpy/fft/fftpack_lite.cpython-34m.so 775
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/distutils/tests/f2py_ext/setup.py 644
/usr/bin/env
python34-numpy.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/distutils/tests/test_misc_util.py 644
/usr/bin/env
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/distutils/tests/swig_ext/src/example.c
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/__ufunc_api.h
python34-numpy.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/core/include/numpy/arrayscalars.h
python34-numpy-f2py.x86_64: E: devel-dependency python34-devel
python34-numpy-f2py.x86_64: W: summary-not-capitalized C f2py for numpy
python34-numpy-f2py.x86_64: W: only-non-binary-in-usr-lib
python34-numpy-f2py.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/f2py/diagnose.py 644 /usr/bin/env
python34-numpy-f2py.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/f2py/f90mod_rules.py 644 /usr/bin/env
python34-numpy-f2py.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/f2py/cfuncs.py 644 /usr/bin/env
python34-numpy-f2py.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/f2py/f2py2e.py 644 /usr/bin/env
python34-numpy-f2py.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/f2py/crackfortran.py 644 /usr/bin/env
python34-numpy-f2py.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/f2py/cb_rules.py 644 /usr/bin/env
python34-numpy-f2py.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/f2py/src/fortranobject.h
python34-numpy-f2py.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/f2py/use_rules.py 644 /usr/bin/env
python34-numpy-f2py.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/f2py/common_rules.py 644 /usr/bin/env
python34-numpy-f2py.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/f2py/rules.py 644 /usr/bin/env
python34-numpy-f2py.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/f2py/src/fortranobject.c
python34-numpy-f2py.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/f2py/__init__.py 644 /usr/bin/env
python34-numpy-f2py.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/f2py/setup.py 644 /usr/bin/env
python34-numpy-f2py.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/f2py/auxfuncs.py 644 /usr/bin/env
python34-numpy-f2py.x86_64: W: hidden-file-or-dir
/usr/lib64/python3.4/site-packages/numpy/f2py/tests/src/assumed_shape/.f2py_f2cmap
python34-numpy-f2py.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/f2py/capi_maps.py 644 /usr/bin/env
python34-numpy-f2py.x86_64: E: non-executable-script
/usr/lib64/python3.4/site-packages/numpy/f2py/func2subr.py 644 /usr/bin/env
python34-numpy-f2py.x86_64: W: devel-file-in-non-devel-package
/usr/lib64/python3.4/site-packages/numpy/f2py/tests/src/array_from_pyobj/wrapmodule.c
2 packages and 0 specfiles checked; 47 errors, 35 warnings.


 Requires:
 ---------
  $ rpm -qp --requires python34-numpy-1.10.4-3.el7.centos.x86_64.rpm | sort |
uniq -c
      1 ld-linux-x86-64.so.2()(64bit)
      1 ld-linux-x86-64.so.2(GLIBC_2.3)(64bit)
      1 libc.so.6()(64bit)
      1 libc.so.6(GLIBC_2.11)(64bit)
      1 libc.so.6(GLIBC_2.14)(64bit)
      1 libc.so.6(GLIBC_2.2.5)(64bit)
      1 libc.so.6(GLIBC_2.3.4)(64bit)
      1 libc.so.6(GLIBC_2.3)(64bit)
      1 libc.so.6(GLIBC_2.4)(64bit)
      1 libgcc_s.so.1()(64bit)
      1 libgfortran.so.3()(64bit)
      1 libm.so.6()(64bit)
      1 libm.so.6(GLIBC_2.2.5)(64bit)
      1 libpthread.so.0()(64bit)
      1 libpthread.so.0(GLIBC_2.2.5)(64bit)
      1 libpython3.4m.so.1.0()(64bit)
      1 libquadmath.so.0()(64bit)
      1 libsatlas.so.3()(64bit)
      1 libtatlas.so.3()(64bit)
      1 python(abi) = 3.4
      1 rpmlib(CompressedFileNames) <= 3.0.4-1
      1 rpmlib(FileDigests) <= 4.6.0-1
      1 rpmlib(PartialHardlinkSets) <= 4.0.4-1
      1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
      1 rpmlib(PayloadIsXz) <= 5.2-1
      1 rtld(GNU_HASH)

  $ rpm -qp --requires python34-numpy-f2py-1.10.4-3.el7.centos.x86_64.rpm |
sort | uniq -c
      1 python34-devel
      1 python34-numpy = 1.10.4-3.el7.centos
      1 python(abi) = 3.4
      1 rpmlib(CompressedFileNames) <= 3.0.4-1
      1 rpmlib(FileDigests) <= 4.6.0-1
      1 rpmlib(PartialHardlinkSets) <= 4.0.4-1
      1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
      1 rpmlib(PayloadIsXz) <= 5.2-1
      1 /usr/bin/python3.4

 Provides:
 ---------
  $ rpm -qp --provides python34-numpy-1.10.4-3.el7.centos.x86_64.rpm | sort |
uniq -c
      1 python34-numpy = 1.10.4-3.el7.centos
      1 python34-numpy(x86-64) = 1.10.4-3.el7.centos

  $ rpm -qp --provides python34-numpy-f2py-1.10.4-3.el7.centos.x86_64.rpm |
sort | uniq -c
      1 python34-numpy-f2py = 1.10.4-3.el7.centos
      1 python34-numpy-f2py(x86-64) = 1.10.4-3.el7.centos


Source checksums
----------------
http://downloads.sourceforge.net/numpy/numpy-1.10.4.tar.gz :
  CHECKSUM(SHA256) this package     :
f7f91842056a7cf680b0eaf8cefc5e46c69e2521e651128d2e6aaaccec8652ae
  CHECKSUM(SHA256) upstream package :
f7f91842056a7cf680b0eaf8cefc5e46c69e2521e651128d2e6aaaccec8652ae


Generated by fedora-review 0.6.0 (3c5c9d7) last change: 2015-05-20
Command line :/usr/bin/fedora-review -m epel-7-x86_64 -b 1297514
Buildroot used: epel-7-x86_64
Active plugins: Python, Generic, Shell-api, C/C++
Disabled plugins: Java, SugarActivity, fonts, Haskell, Ocaml, Perl, R, PHP,
Ruby
Disabled flags: EXARCH, DISTTAG, EPEL5, BATCH, EPEL6


Remarks:
--------
1) There are some files with different license that can be mentioned:

BSD (2 clause)
--------------
numpy-1.10.4/numpy/random/mtrand/initarray.c

BSD (2 clause) MIT/X11 (BSD like)
---------------------------------
numpy-1.10.4/numpy/random/mtrand/randomkit.c

MIT/X11 (BSD like)
------------------
numpy-1.10.4/numpy/random/mtrand/distributions.c
numpy-1.10.4/numpy/random/mtrand/distributions.h
numpy-1.10.4/numpy/random/mtrand/mtrand.pyx
numpy-1.10.4/numpy/random/mtrand/randomkit.h

PSF (v2)
--------
numpy-1.10.4/doc/scipy-sphinx-theme/_theme/scipy/static/js/copybutton.js


2) openblas is still missing in BR:

F2PY Version 2
lapack_opt_info:
openblas_lapack_info:
  libraries openblas not found in ['/usr/local/lib64', '/usr/local/lib',
'/usr/lib64', '/usr/lib', '/usr/lib/']
  NOT AVAILABLE
lapack_mkl_info:
mkl_info:
  libraries mkl,vml,guide not found in ['/usr/local/lib64', '/usr/local/lib',
'/usr/lib64', '/usr/lib', '/usr/lib/']
  NOT AVAILABLE
  NOT AVAILABLE

3) Please fix shebang in Python files according rpmlint report (e.g. as
described here:
https://fedoraproject.org/wiki/Packaging_tricks#Remove_shebang_from_Python_libraries
), and other error/warnings where applicable.
Also, while importing package consider filtering some errors (like
"devel-dependency python34-devel") in `.rpmlint` file.

4) Please drop epoch tag "1:" from changelog items;

5) I would drop "relc" since `beta/rc` releases woldn't ever go there (although
a pure cosmetic change).

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