[Bug 1276880] Review Request: python-mne - Magnetoencephalography (MEG) and Electroencephalography (EEG) data analysis

[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

 



https://bugzilla.redhat.com/show_bug.cgi?id=1276880



--- Comment #11 from Julien Enselme <jujens@xxxxxxxxx> ---
Almost good:

- Please fix the non-executable-script issues before I approve the package.
- The documentation is quite huge because of the examples. I suggest that you
create a doc package anyway. Furthermore if a user install both the python2 and
python3 version, he/she won't have the examples twice. Not blocking.


Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed



===== MUST items =====

Generic:
[X]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[X]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "BSD (3 clause)", "Unknown or generated". 1562 files have
     unknown license. Detailed output of licensecheck in /tmp/1276880
     -python-mne/licensecheck.txt
[X]: License file installed when any subpackage combination is installed.
[X]: Package contains no bundled libraries without FPC exception.
[X]: Changelog in prescribed format.
[X]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[-]: Development files must be in a -devel package
[X]: Package uses nothing in %doc for runtime.
[X]: Package consistently uses macros (instead of hard-coded directory
     names).
[X]: Package is named according to the Package Naming Guidelines.
[X]: Package does not generate any conflict.
[X]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[X]: Requires correct, justified where necessary.
[X]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[X]: Package is not known to require an ExcludeArch tag.
[X]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 819200 bytes in 260 files.
[X]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: All build dependencies are listed in BuildRequires, except for any
     that are listed in the exceptions section of Packaging Guidelines.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local

Python:
[X]: Python eggs must not download any dependencies during the build
     process.
[X]: A package which is used by another package via an egg interface should
     provide egg info.
[X]: Package meets the Packaging Guidelines::Python
[x]: Package contains BR: python2-devel or python3-devel
[x]: Binary eggs must be removed in %prep

===== SHOULD items =====

Generic:
[-]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[X]: Final provides and requires are sane (see attachments).
[-]: Fully versioned dependency in subpackages if applicable.
     Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in
     python2-mne , python3-mne
[?]: Package functions as described.
[X]: Latest version is packaged.
[X]: Package does not include license text files separate from upstream.
[-]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[?]: Package should compile and build into binary rpms on all supported
     architectures.
[X]: %check is present and all tests pass.
[X]: Packages should try to preserve timestamps of original installed
     files.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
Checking: python2-mne-0.10-3.fc24.noarch.rpm
          python3-mne-0.10-3.fc24.noarch.rpm
          python-mne-0.10-3.fc24.src.rpm
python2-mne.noarch: E: explicit-lib-dependency python-matplotlib
python2-mne.noarch: W: spelling-error Summary(en_US) Magnetoencephalography ->
Electroencephalography, Electroencephalograph, Electroencephalogram
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_make_scalp_surfaces.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/stats/cluster_level.py 644 /usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_kit2fiff.py 644 /usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_compute_proj_eog.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_clean_eog_ecg.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_freeview_bem_surfaces.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_report.py 644 /usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_compute_proj_ecg.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_bti2fiff.py 644 /usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_surf2bem.py 644 /usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_watershed_bem.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_compare_fiff.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_maxfilter.py 644 /usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_flash_bem_model.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_browse_raw.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_coreg.py 644 /usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_flash_bem.py 644 /usr/bin/env
python2-mne.noarch: W: no-manual-page-for-binary python2-mne
python2-mne.noarch: W: no-manual-page-for-binary mne-2
python2-mne.noarch: W: no-manual-page-for-binary mne-2.7
python3-mne.noarch: E: explicit-lib-dependency python3-matplotlib
python3-mne.noarch: W: spelling-error Summary(en_US) Magnetoencephalography ->
Electroencephalography, Electroencephalograph, Electroencephalogram
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_make_scalp_surfaces.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_bti2fiff.py 644 /usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_browse_raw.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_watershed_bem.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_flash_bem.py 644 /usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_kit2fiff.py 644 /usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_compute_proj_ecg.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_compare_fiff.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_flash_bem_model.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_compute_proj_eog.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_coreg.py 644 /usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_maxfilter.py 644 /usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/stats/cluster_level.py 644 /usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_freeview_bem_surfaces.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_surf2bem.py 644 /usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_report.py 644 /usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_clean_eog_ecg.py 644
/usr/bin/env
python3-mne.noarch: W: no-manual-page-for-binary mne-3.4
python3-mne.noarch: W: no-manual-page-for-binary mne-3
python3-mne.noarch: W: no-manual-page-for-binary python3-mne
python3-mne.noarch: W: no-manual-page-for-binary mne
python-mne.src: W: spelling-error Summary(en_US) Magnetoencephalography ->
Electroencephalography, Electroencephalograph, Electroencephalogram
python-mne.src:26: W: unversioned-explicit-provides bundled(bootstrap)
python-mne.src:27: W: unversioned-explicit-provides bundled(js-jquery)
python-mne.src:28: W: unversioned-explicit-provides bundled(js-jquery-ui)
python-mne.src:29: W: unversioned-explicit-provides bundled(js-d3)
python-mne.src:30: W: unversioned-explicit-provides bundled(js-mpld3)
python-mne.src:31: W: unversioned-explicit-provides bundled(python2-FieldTrip)
python-mne.src:64: W: unversioned-explicit-provides bundled(bootstrap)
python-mne.src:65: W: unversioned-explicit-provides bundled(js-jquery)
python-mne.src:66: W: unversioned-explicit-provides bundled(js-jquery-ui)
python-mne.src:67: W: unversioned-explicit-provides bundled(js-d3)
python-mne.src:68: W: unversioned-explicit-provides bundled(js-mpld3)
python-mne.src:69: W: unversioned-explicit-provides bundled(python3-FieldTrip)
python-mne.src:133: W: macro-in-comment %{SOURCE1}
3 packages and 0 specfiles checked; 36 errors, 23 warnings.




Rpmlint (installed packages)
----------------------------
python2-mne.noarch: E: explicit-lib-dependency python-matplotlib
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_coreg.py 644 /usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_compute_proj_ecg.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_kit2fiff.py 644 /usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_browse_raw.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_bti2fiff.py 644 /usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_watershed_bem.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_compare_fiff.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_report.py 644 /usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/stats/cluster_level.py 644 /usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_maxfilter.py 644 /usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_flash_bem.py 644 /usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_surf2bem.py 644 /usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_flash_bem_model.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_freeview_bem_surfaces.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_clean_eog_ecg.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_compute_proj_eog.py 644
/usr/bin/env
python2-mne.noarch: E: non-executable-script
/usr/lib/python2.7/site-packages/mne/commands/mne_make_scalp_surfaces.py 644
/usr/bin/env
python2-mne.noarch: W: no-manual-page-for-binary mne-2
python2-mne.noarch: W: no-manual-page-for-binary python2-mne
python2-mne.noarch: W: no-manual-page-for-binary mne-2.7
python3-mne.noarch: E: explicit-lib-dependency python3-matplotlib
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_make_scalp_surfaces.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_freeview_bem_surfaces.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_maxfilter.py 644 /usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_compute_proj_ecg.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_clean_eog_ecg.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_surf2bem.py 644 /usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_bti2fiff.py 644 /usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_browse_raw.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_coreg.py 644 /usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_compare_fiff.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_flash_bem.py 644 /usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_watershed_bem.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/stats/cluster_level.py 644 /usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_compute_proj_eog.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_report.py 644 /usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_flash_bem_model.py 644
/usr/bin/env
python3-mne.noarch: E: non-executable-script
/usr/lib/python3.4/site-packages/mne/commands/mne_kit2fiff.py 644 /usr/bin/env
python3-mne.noarch: W: no-manual-page-for-binary mne
python3-mne.noarch: W: no-manual-page-for-binary mne-3.4
python3-mne.noarch: W: no-manual-page-for-binary python3-mne
python3-mne.noarch: W: no-manual-page-for-binary mne-3
2 packages and 0 specfiles checked; 36 errors, 7 warnings.



Requires
--------
python2-mne (rpmlib, GLIBC filtered):
    /usr/bin/python3
    numpy
    python(abi)
    python-decorator
    python-matplotlib
    python-tempita
    python2-h5io
    python2-jdcal
    python2-six
    scipy

python3-mne (rpmlib, GLIBC filtered):
    /usr/bin/python3
    python(abi)
    python3-decorator
    python3-h5io
    python3-jdcal
    python3-matplotlib
    python3-numpy
    python3-scipy
    python3-six
    python3-tempita



Provides
--------
python2-mne:
    bundled(bootstrap)
    bundled(js-d3)
    bundled(js-jquery)
    bundled(js-jquery-ui)
    bundled(js-mpld3)
    bundled(python2-FieldTrip)
    python-mne
    python-mne(x86-64)
    python2-mne

python3-mne:
    bundled(bootstrap)
    bundled(js-d3)
    bundled(js-jquery)
    bundled(js-jquery-ui)
    bundled(js-mpld3)
    bundled(python3-FieldTrip)
    python3-mne



Source checksums
----------------
https://github.com/mne-tools/mne-python/archive/v0.10/python-mne-0.10.tar.gz :
  CHECKSUM(SHA256) this package     :
85c14c78ce91f7b48ccc16ccb41322d732247ef15996cc5782c108a8b114e1bb
  CHECKSUM(SHA256) upstream package :
85c14c78ce91f7b48ccc16ccb41322d732247ef15996cc5782c108a8b114e1bb


Generated by fedora-review 0.6.0 (3c5c9d7) last change: 2015-05-20
Command line :/usr/bin/fedora-review -m fedora-rawhide-x86_64 -b 1276880
Buildroot used: fedora-rawhide-x86_64
Active plugins: Python, Generic, Shell-api
Disabled plugins: Java, C/C++, fonts, SugarActivity, Ocaml, Perl, Haskell, R,
PHP, Ruby
Disabled flags: EXARCH, DISTTAG, EPEL5, BATCH, EPEL6

-- 
You are receiving this mail because:
You are on the CC list for the bug.
You are always notified about changes to this product and component
_______________________________________________
package-review mailing list
package-review@xxxxxxxxxxxxxxxxxxxxxxx
https://admin.fedoraproject.org/mailman/listinfo/package-review




[Index of Archives]     [Fedora Legacy]     [Fedora Desktop]     [Fedora SELinux]     [Yosemite News]     [KDE Users]     [Fedora Tools]