[Bug 1173159] Review Request: libsbml - Systems Biology Markup Language library

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https://bugzilla.redhat.com/show_bug.cgi?id=1173159

Michel Alexandre Salim <michel@xxxxxxxxxxxxxxx> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
              Flags|fedora-review?              |fedora-review+



--- Comment #28 from Michel Alexandre Salim <michel@xxxxxxxxxxxxxxx> ---
All the remaining issues addressed -- this package is ACCEPTED

Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed


Issues:
=======
- Javadocs are placed in %{_javadocdir}/%{name} (no -%{version} symlink)
  Note: No javadoc subpackage present
  See: https://fedoraproject.org/wiki/Packaging:Java#Javadoc_installation
- Javadoc documentation files are generated and included in -javadoc
  subpackage
  Note: No javadoc subpackage present
  See: https://fedoraproject.org/wiki/Packaging:Java#Javadoc_installation


===== MUST items =====

C/C++:
[x]: Package does not contain kernel modules.
[x]: Package contains no static executables.
[x]: Development (unversioned) .so files in -devel subpackage, if present.
     Note: Unversioned so-files in private %_libdir subdirectory (see
     attachment). Verify they are not in ld path.
[x]: Header files in -devel subpackage, if present.
[x]: ldconfig called in %post and %postun if required.
[x]: Package does not contain any libtool archives (.la)
[x]: Rpath absent or only used for internal libs.

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses found:
     "LGPL", "GPL (v3 or later)", "Unknown or generated", "MIT/X11 (BSD
     like)", "*No copyright* LGPL (with incorrect FSF address)", "BSD (3
     clause)", "LGPL (with incorrect FSF address)". 1118 files have unknown
     license. Detailed output of licensecheck in
     /home/michel/sources/fedora/reviews/1173159-libsbml/licensecheck.txt
[x]: License file installed when any subpackage combination is installed.
[x]: Package requires other packages for directories it uses.
[x]: %build honors applicable compiler flags or justifies otherwise.
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[x]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Useful -debuginfo package or justification otherwise.
[x]: Package is not known to require an ExcludeArch tag.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 276480 bytes in 6 files.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least one
     supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: All build dependencies are listed in BuildRequires, except for any that
     are listed in the exceptions section of Packaging Guidelines.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package use %makeinstall only when make install' ' DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package do not use a name that already exist
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as provided
     in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local

Java:
[x]: Bundled jar/class files should be removed before build

Maven:
[-]: If package contains pom.xml files install it (including depmaps) even
     when building with ant
[x]: Old add_to_maven_depmap macro is not being used

Perl:
[x]: Package contains the mandatory BuildRequires and Requires:.

Python:
[x]: Python eggs must not download any dependencies during the build process.
[-]: A package which is used by another package via an egg interface should
     provide egg info.
[x]: Package meets the Packaging Guidelines::Python
[x]: Package contains BR: python2-devel or python3-devel
[x]: Binary eggs must be removed in %prep

===== SHOULD items =====

Generic:
[-]: If the source package does not include license text(s) as a separate file
     from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[x]: Fully versioned dependency in subpackages if applicable.
     Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in libsbml-doc
[?]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[x]: Patches link to upstream bugs/comments/lists or are otherwise justified.
[-]: Scriptlets must be sane, if used.
[-]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[?]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[?]: Packages should try to preserve timestamps of original installed files.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: Dist tag is present (not strictly required in GL).
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Uses parallel make %{?_smp_mflags} macro.
[x]: The placement of pkgconfig(.pc) files are correct.
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

Java:
[-]: Packages are noarch unless they use JNI
     JNI is used
[x]: Package uses upstream build method (ant/maven/etc.)

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Large data in /usr/share should live in a noarch subpackage if package is
     arched.
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
Checking: libsbml-5.11.0-10.fc21.x86_64.rpm
          libsbml-devel-5.11.0-10.fc21.x86_64.rpm
          python-libsbml-5.11.0-10.fc21.x86_64.rpm
          python3-libsbml-5.11.0-10.fc21.x86_64.rpm
          perl-LibSBML-5.11.0-10.fc21.x86_64.rpm
          ruby-SBML-5.11.0-10.fc21.x86_64.rpm
          java-libsbml-5.11.0-10.fc21.x86_64.rpm
          octave-SBML-5.11.0-10.fc21.x86_64.rpm
          R-libSBML-5.11.0-10.fc21.x86_64.rpm
          libsbml-sharp-5.11.0-10.fc21.x86_64.rpm
          libsbml-doc-5.11.0-10.fc21.noarch.rpm
          libsbml-5.11.0-10.fc21.src.rpm
libsbml-devel.x86_64: W: only-non-binary-in-usr-lib
libsbml-devel.x86_64: W: no-documentation
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/ListOfCurveElements.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/ColorDefinition.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/GraphicalPrimitive1D.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/RelAbsVector.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Polygon.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Transformation.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Style.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Text.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/GlobalStyle.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/RenderGroup.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Ellipse.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/GraphicalPrimitive2D.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/GradientBase.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/RadialGradient.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/GradientStop.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/RenderPoint.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/RenderInformationBase.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/RenderCurve.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Rectangle.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/RenderCubicBezier.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/LineEnding.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Image.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/LocalStyle.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/LinearGradient.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/GlobalRenderInformation.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/LocalRenderInformation.h
libsbml-devel.x86_64: E: incorrect-fsf-address
/usr/include/sbml/packages/render/sbml/Transformation2D.h
python-libsbml.x86_64: W: no-documentation
python3-libsbml.x86_64: W: no-documentation
perl-LibSBML.x86_64: W: no-documentation
ruby-SBML.x86_64: W: spelling-error Summary(en_US) libSBML -> Librium
ruby-SBML.x86_64: W: spelling-error %description -l en_US libSBML -> Librium
java-libsbml.x86_64: W: no-documentation
octave-SBML.x86_64: W: spelling-error Summary(en_US) libSBML -> Librium
octave-SBML.x86_64: W: spelling-error %description -l en_US libSBML -> Librium
octave-SBML.x86_64: W: no-documentation
R-libSBML.x86_64: W: no-documentation
R-libSBML.x86_64: E: zero-length /usr/lib64/R/library/libSBML/help/libSBML.rdb
R-libSBML.x86_64: E: zero-length /usr/lib64/R/library/libSBML/help/AnIndex
libsbml-sharp.x86_64: W: no-documentation
libsbml.src:181: W: unversioned-explicit-provides bundled(jquery)
12 packages and 0 specfiles checked; 29 errors, 14 warnings.




Rpmlint (installed packages)
----------------------------
Cannot parse rpmlint output:


Requires
--------
python3-libsbml (rpmlib, GLIBC filtered):
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libpython3.4m.so.1.0()(64bit)
    libsbml(x86-64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    python(abi)
    rtld(GNU_HASH)

perl-LibSBML (rpmlib, GLIBC filtered):
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libperl.so.5.18()(64bit)
    libsbml(x86-64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    perl(:MODULE_COMPAT_5.18.4)
    perl(DynaLoader)
    perl(Exporter)
    perl(base)
    perl(vars)
    rtld(GNU_HASH)

libsbml-sharp (rpmlib, GLIBC filtered):
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libsbml(x86-64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    mono-core
    rtld(GNU_HASH)

libsbml (rpmlib, GLIBC filtered):
    /sbin/ldconfig
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    rtld(GNU_HASH)

libsbml-doc (rpmlib, GLIBC filtered):
    libsbml

ruby-SBML (rpmlib, GLIBC filtered):
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libruby.so.2.1()(64bit)
    libsbml(x86-64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    rtld(GNU_HASH)
    ruby(release)

octave-SBML (rpmlib, GLIBC filtered):
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    liboctave.so.2()(64bit)
    liboctinterp.so.2()(64bit)
    libsbml(x86-64)
    libsbml.so.5()(64bit)
    libstdc++.so.6()(64bit)
    libxml2.so.2()(64bit)
    libz.so.1()(64bit)
    octave
    octave(api)
    rtld(GNU_HASH)

python-libsbml (rpmlib, GLIBC filtered):
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libpython2.7.so.1.0()(64bit)
    libsbml(x86-64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    python(abi)
    rtld(GNU_HASH)

java-libsbml (rpmlib, GLIBC filtered):
    java-headless
    jpackage-utils
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libsbml(x86-64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    rtld(GNU_HASH)

R-libSBML (rpmlib, GLIBC filtered):
    R-core
    libR.so()(64bit)
    libbz2.so.1()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libminizip.so.1()(64bit)
    libsbml(x86-64)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    libxml2.so.2(LIBXML2_2.6.0)(64bit)
    libxml2.so.2(LIBXML2_2.6.1)(64bit)
    libz.so.1()(64bit)
    rtld(GNU_HASH)

libsbml-devel (rpmlib, GLIBC filtered):
    /usr/bin/pkg-config
    libsbml(x86-64)
    libsbml.so.5()(64bit)
    pkgconfig(libxml-2.0)



Provides
--------
python3-libsbml:
    python3-libsbml
    python3-libsbml(x86-64)

perl-LibSBML:
    perl(LibSBML)
    perl(LibSBML::ASTBase)
    perl(LibSBML::ASTBasePlugin)
    perl(LibSBML::ASTNode)
    perl(LibSBML::ASTNodeList)
    perl(LibSBML::AlgebraicRule)
    perl(LibSBML::AssignmentRule)
    perl(LibSBML::Association)
    perl(LibSBML::BoundingBox)
    perl(LibSBML::CVTerm)
    perl(LibSBML::CVTermList)
    perl(LibSBML::CobraToFbcConverter)
    perl(LibSBML::ColorDefinition)
    perl(LibSBML::CompBase)
    perl(LibSBML::CompExtension)
    perl(LibSBML::CompFlatteningConverter)
    perl(LibSBML::CompModelPlugin)
    perl(LibSBML::CompPkgNamespaces)
    perl(LibSBML::CompSBMLDocumentPlugin)
    perl(LibSBML::CompSBasePlugin)
    perl(LibSBML::Compartment)
    perl(LibSBML::CompartmentGlyph)
    perl(LibSBML::CompartmentType)
    perl(LibSBML::Constraint)
    perl(LibSBML::ConversionOption)
    perl(LibSBML::ConversionProperties)
    perl(LibSBML::CubicBezier)
    perl(LibSBML::Curve)
    perl(LibSBML::Date)
    perl(LibSBML::DateList)
    perl(LibSBML::DefaultTerm)
    perl(LibSBML::Delay)
    perl(LibSBML::Deletion)
    perl(LibSBML::Dimensions)
    perl(LibSBML::ElementFilter)
    perl(LibSBML::Ellipse)
    perl(LibSBML::Event)
    perl(LibSBML::EventAssignment)
    perl(LibSBML::ExternalModelDefinition)
    perl(LibSBML::FbcExtension)
    perl(LibSBML::FbcModelPlugin)
    perl(LibSBML::FbcPkgNamespaces)
    perl(LibSBML::FbcSpeciesPlugin)
    perl(LibSBML::FbcToCobraConverter)
    perl(LibSBML::FluxBound)
    perl(LibSBML::FluxObjective)
    perl(LibSBML::FunctionDefinition)
    perl(LibSBML::FunctionTerm)
    perl(LibSBML::GeneAssociation)
    perl(LibSBML::GeneralGlyph)
    perl(LibSBML::GlobalRenderInformation)
    perl(LibSBML::GlobalStyle)
    perl(LibSBML::GradientBase)
    perl(LibSBML::GradientStop)
    perl(LibSBML::GraphicalObject)
    perl(LibSBML::GraphicalPrimitive1D)
    perl(LibSBML::GraphicalPrimitive2D)
    perl(LibSBML::ISBMLExtensionNamespaces)
    perl(LibSBML::IdList)
    perl(LibSBML::IdentifierTransformer)
    perl(LibSBML::Image)
    perl(LibSBML::InitialAssignment)
    perl(LibSBML::Input)
    perl(LibSBML::KineticLaw)
    perl(LibSBML::L3ParserSettings)
    perl(LibSBML::Layout)
    perl(LibSBML::LayoutExtension)
    perl(LibSBML::LayoutModelPlugin)
    perl(LibSBML::LayoutPkgNamespaces)
    perl(LibSBML::LayoutSpeciesReferencePlugin)
    perl(LibSBML::LineEnding)
    perl(LibSBML::LineSegment)
    perl(LibSBML::LinearGradient)
    perl(LibSBML::ListOf)
    perl(LibSBML::ListOfColorDefinitions)
    perl(LibSBML::ListOfCompartmentGlyphs)
    perl(LibSBML::ListOfCompartmentTypes)
    perl(LibSBML::ListOfCompartments)
    perl(LibSBML::ListOfConstraints)
    perl(LibSBML::ListOfCurveElements)
    perl(LibSBML::ListOfDeletions)
    perl(LibSBML::ListOfDrawables)
    perl(LibSBML::ListOfEventAssignments)
    perl(LibSBML::ListOfEvents)
    perl(LibSBML::ListOfExternalModelDefinitions)
    perl(LibSBML::ListOfFluxBounds)
    perl(LibSBML::ListOfFluxObjectives)
    perl(LibSBML::ListOfFunctionDefinitions)
    perl(LibSBML::ListOfFunctionTerms)
    perl(LibSBML::ListOfGeneAssociations)
    perl(LibSBML::ListOfGlobalRenderInformation)
    perl(LibSBML::ListOfGlobalStyles)
    perl(LibSBML::ListOfGradientDefinitions)
    perl(LibSBML::ListOfGradientStops)
    perl(LibSBML::ListOfGraphicalObjects)
    perl(LibSBML::ListOfInitialAssignments)
    perl(LibSBML::ListOfInputs)
    perl(LibSBML::ListOfLayouts)
    perl(LibSBML::ListOfLineEndings)
    perl(LibSBML::ListOfLineSegments)
    perl(LibSBML::ListOfLocalParameters)
    perl(LibSBML::ListOfLocalRenderInformation)
    perl(LibSBML::ListOfLocalStyles)
    perl(LibSBML::ListOfModelDefinitions)
    perl(LibSBML::ListOfObjectives)
    perl(LibSBML::ListOfOutputs)
    perl(LibSBML::ListOfParameters)
    perl(LibSBML::ListOfPorts)
    perl(LibSBML::ListOfQualitativeSpecies)
    perl(LibSBML::ListOfReactionGlyphs)
    perl(LibSBML::ListOfReactions)
    perl(LibSBML::ListOfReferenceGlyphs)
    perl(LibSBML::ListOfReplacedElements)
    perl(LibSBML::ListOfRules)
    perl(LibSBML::ListOfSpecies)
    perl(LibSBML::ListOfSpeciesGlyphs)
    perl(LibSBML::ListOfSpeciesReferenceGlyphs)
    perl(LibSBML::ListOfSpeciesReferences)
    perl(LibSBML::ListOfSpeciesTypes)
    perl(LibSBML::ListOfSubmodels)
    perl(LibSBML::ListOfTextGlyphs)
    perl(LibSBML::ListOfTransitions)
    perl(LibSBML::ListOfUnitDefinitions)
    perl(LibSBML::ListOfUnits)
    perl(LibSBML::LocalParameter)
    perl(LibSBML::LocalRenderInformation)
    perl(LibSBML::LocalStyle)
    perl(LibSBML::Model)
    perl(LibSBML::ModelCreator)
    perl(LibSBML::ModelCreatorList)
    perl(LibSBML::ModelDefinition)
    perl(LibSBML::ModelHistory)
    perl(LibSBML::ModifierSpeciesReference)
    perl(LibSBML::OFStream)
    perl(LibSBML::OStream)
    perl(LibSBML::OStringStream)
    perl(LibSBML::Objective)
    perl(LibSBML::Output)
    perl(LibSBML::Parameter)
    perl(LibSBML::Point)
    perl(LibSBML::Polygon)
    perl(LibSBML::Port)
    perl(LibSBML::Priority)
    perl(LibSBML::QualExtension)
    perl(LibSBML::QualModelPlugin)
    perl(LibSBML::QualPkgNamespaces)
    perl(LibSBML::QualitativeSpecies)
    perl(LibSBML::RDFAnnotationParser)
    perl(LibSBML::RadialGradient)
    perl(LibSBML::RateRule)
    perl(LibSBML::Reaction)
    perl(LibSBML::ReactionGlyph)
    perl(LibSBML::Rectangle)
    perl(LibSBML::ReferenceGlyph)
    perl(LibSBML::RelAbsVector)
    perl(LibSBML::RenderCubicBezier)
    perl(LibSBML::RenderCurve)
    perl(LibSBML::RenderExtension)
    perl(LibSBML::RenderGraphicalObjectPlugin)
    perl(LibSBML::RenderGroup)
    perl(LibSBML::RenderInformationBase)
    perl(LibSBML::RenderLayoutPlugin)
    perl(LibSBML::RenderListOfLayoutsPlugin)
    perl(LibSBML::RenderPkgNamespaces)
    perl(LibSBML::RenderPoint)
    perl(LibSBML::ReplacedBy)
    perl(LibSBML::ReplacedElement)
    perl(LibSBML::Replacing)
    perl(LibSBML::Rule)
    perl(LibSBML::SBMLConstructorException)
    perl(LibSBML::SBMLConverter)
    perl(LibSBML::SBMLConverterRegistry)
    perl(LibSBML::SBMLDocument)
    perl(LibSBML::SBMLDocumentPlugin)
    perl(LibSBML::SBMLError)
    perl(LibSBML::SBMLErrorLog)
    perl(LibSBML::SBMLExtension)
    perl(LibSBML::SBMLExtensionException)
    perl(LibSBML::SBMLExtensionRegistry)
    perl(LibSBML::SBMLExternalValidator)
    perl(LibSBML::SBMLFileResolver)
    perl(LibSBML::SBMLFunctionDefinitionConverter)
    perl(LibSBML::SBMLIdConverter)
    perl(LibSBML::SBMLInferUnitsConverter)
    perl(LibSBML::SBMLInitialAssignmentConverter)
    perl(LibSBML::SBMLLevelVersionConverter)
    perl(LibSBML::SBMLLocalParameterConverter)
    perl(LibSBML::SBMLNamespaces)
    perl(LibSBML::SBMLNamespacesList)
    perl(LibSBML::SBMLReactionConverter)
    perl(LibSBML::SBMLReader)
    perl(LibSBML::SBMLResolver)
    perl(LibSBML::SBMLResolverRegistry)
    perl(LibSBML::SBMLRuleConverter)
    perl(LibSBML::SBMLStripPackageConverter)
    perl(LibSBML::SBMLTransforms)
    perl(LibSBML::SBMLUnitsConverter)
    perl(LibSBML::SBMLUri)
    perl(LibSBML::SBMLValidator)
    perl(LibSBML::SBMLWriter)
    perl(LibSBML::SBO)
    perl(LibSBML::SBase)
    perl(LibSBML::SBaseExtensionPoint)
    perl(LibSBML::SBaseList)
    perl(LibSBML::SBasePlugin)
    perl(LibSBML::SBaseRef)
    perl(LibSBML::SimpleSpeciesReference)
    perl(LibSBML::Species)
    perl(LibSBML::SpeciesGlyph)
    perl(LibSBML::SpeciesReference)
    perl(LibSBML::SpeciesReferenceGlyph)
    perl(LibSBML::SpeciesType)
    perl(LibSBML::StoichiometryMath)
    perl(LibSBML::StringSet)
    perl(LibSBML::Style)
    perl(LibSBML::Submodel)
    perl(LibSBML::SyntaxChecker)
    perl(LibSBML::Text)
    perl(LibSBML::TextGlyph)
    perl(LibSBML::Transformation)
    perl(LibSBML::Transformation2D)
    perl(LibSBML::Transition)
    perl(LibSBML::Trigger)
    perl(LibSBML::Unit)
    perl(LibSBML::UnitDefinition)
    perl(LibSBML::XMLAttributes)
    perl(LibSBML::XMLConstructorException)
    perl(LibSBML::XMLError)
    perl(LibSBML::XMLErrorLog)
    perl(LibSBML::XMLInputStream)
    perl(LibSBML::XMLNamespaces)
    perl(LibSBML::XMLNode)
    perl(LibSBML::XMLOutputStream)
    perl(LibSBML::XMLOwningOutputFileStream)
    perl(LibSBML::XMLOwningOutputStringStream)
    perl(LibSBML::XMLToken)
    perl(LibSBML::XMLTriple)
    perl(LibSBML::double_array)
    perl(LibSBML::int_array)
    perl(LibSBMLc)
    perl-LibSBML
    perl-LibSBML(x86-64)

libsbml-sharp:
    libsbml-sharp
    libsbml-sharp(x86-64)
    libsbmlcs.so()(64bit)

libsbml:
    libsbml
    libsbml(x86-64)
    libsbml.so.5()(64bit)

libsbml-doc:
    bundled(jquery)
    libsbml-doc

ruby-SBML:
    libSBML.so()(64bit)
    ruby(SBML)
    ruby-SBML
    ruby-SBML(x86-64)

octave-SBML:
    octave-SBML
    octave-SBML(x86-64)

python-libsbml:
    python-libsbml
    python-libsbml(x86-64)

java-libsbml:
    java-libsbml
    java-libsbml(x86-64)
    libsbmlj.so()(64bit)

R-libSBML:
    R-libSBML
    R-libSBML(x86-64)
    libSBML.so()(64bit)

libsbml-devel:
    libsbml-devel
    libsbml-devel(x86-64)
    pkgconfig(libsbml)



Unversioned so-files
--------------------
python-libsbml: /usr/lib64/python2.7/site-packages/libsbml/_libsbml.so
python3-libsbml: /usr/lib64/python3.4/site-packages/libsbml/_libsbml.so
perl-LibSBML: /usr/lib64/perl5/vendor_perl/auto/libSBML/LibSBML.so
ruby-SBML: /usr/lib64/ruby/vendor_ruby/libSBML.so
java-libsbml: /usr/lib64/libsbml/libsbmlj.so
R-libSBML: /usr/lib64/R/library/libSBML/libs/libSBML.so
libsbml-sharp: /usr/lib/mono/libsbmlcsP/libsbmlcs.so

Source checksums
----------------
http://sourceforge.net/projects/sbml/files/libsbml/5.11.0/stable/libSBML-5.11.0-core-plus-packages-src.tar.gz
:
  CHECKSUM(SHA256) this package     :
b21931ca7461494915c617b30d4a9f2cafe831d6ce74989b3e5874e6e3c3f72b
  CHECKSUM(SHA256) upstream package :
b21931ca7461494915c617b30d4a9f2cafe831d6ce74989b3e5874e6e3c3f72b
http://sourceforge.net/projects/sbml/files/libsbml/5.11.0/experimental/source/render-5.11.0-beta-1.zip
:
  CHECKSUM(SHA256) this package     :
5ed5cec563260201b958d790543f5dac8a516a088c4ced52f85cf5fc9e495e69
  CHECKSUM(SHA256) upstream package :
5ed5cec563260201b958d790543f5dac8a516a088c4ced52f85cf5fc9e495e69


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