[Bug 1176593] Review Request: autodock_vina - Docking of small molecules to proteins

[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

 



https://bugzilla.redhat.com/show_bug.cgi?id=1176593

Pranav Kant <pranav913@xxxxxxxxx> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
                 CC|                            |pranav913@xxxxxxxxx



--- Comment #1 from Pranav Kant <pranav913@xxxxxxxxx> ---
This is only an unofficial review.


Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated

Issues:
=======
- All build dependencies are listed in BuildRequires, except for any that are
  listed in the exceptions section of Packaging Guidelines.
  Note: These BR are not needed: gcc-c++
  See: http://fedoraproject.org/wiki/Packaging/Guidelines#Exceptions_2

- This is just a suggestion. I think it would be better if you put each
  BuildRequire in a seperate line. Its easy to compare spec files this way.

- Move the LICENSE file from %doc to %license.
  See :
http://fedoraproject.org/wiki/Changes/Use_license_macro_in_RPMs_for_packages_in_Cloud_Image

- You should have incremented the release number to 2 and same should have been
  reflected in the ChangeLog entry corresponding to Jun 30, 2014.

- %defattr is not needed for rpm>=4.4
  See: http://fedoraproject.org/wiki/Packaging:Guidelines#File_Permissions

- I am not sure about it. This is just a suggestion. Your description can be
  made short. I don't think there is need of last two paragraphs in your
  description at all.

- Package must not contain rm -rf $RPM_BUILD_ROOT at the beginning of the
install.

- %clean section only contains rm -rf $RPM_BUILD_ROOT. This is not needed.

- Your patch files contains ^M characters at the end of file. It seems you
  transferred them from Windows and hence needs to be processed.

- You don't require BuildRoot tag unless it is for EPEL5. 
  See: http://fedoraproject.org/wiki/Packaging:Guidelines#BuildRoot_tag

===== MUST items =====

C/C++:
[x]: Package does not contain kernel modules.
[x]: Package contains no static executables.
[x]: Package does not contain any libtool archives (.la)
[x]: Rpath absent or only used for internal libs.

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
[?]: %build honors applicable compiler flags or justifies otherwise.
[x]: Package contains no bundled libraries without FPC exception.
[!]: Changelog in prescribed format.
     See Issues.
[x]: Sources contain only permissible code or content.
[x]: Each %files section contains %defattr if rpm < 4.4
     Note: %defattr present but not needed. See Issues.
[-]: Package contains desktop file if it is a GUI application.
[-]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[?]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Useful -debuginfo package or justification otherwise.
[x]: Package is not known to require an ExcludeArch tag.
[-]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
[x]: Packages must not store files under /srv, /opt or /usr/local
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least one
     supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[!]: If (and only if) the source package includes the text of the license(s)
     in its own file, then that file, containing the text of the license(s)
     for the package is included in %license.
     See Issues above.
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[!]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package use %makeinstall only when make install' ' DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package do not use a name that already exist
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as provided
     in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.

===== SHOULD items =====

Generic:
[!]: Buildroot is not present
[!]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[-]: If the source package does not include license text(s) as a separate file
     from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[x]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[?]: Patches link to upstream bugs/comments/lists or are otherwise justified.
[!]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[x]: Package should compile and build into binary rpms on all supported
     architectures.
[?]: %check is present and all tests pass.
[?]: Packages should try to preserve timestamps of original installed files.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: Reviewer should test that the package builds in mock.
[x]: Dist tag is present (not strictly required in GL).
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Uses parallel make %{?_smp_mflags} macro.
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[-]: Large data in /usr/share should live in a noarch subpackage if package is
     arched.
[x]: Rpmlint is run on all installed packages.
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
Checking: autodock_vina-1.1.2-1.fc21.x86_64.rpm
          autodock_vina-1.1.2-1.fc21.src.rpm
autodock_vina.x86_64: W: spelling-error %description -l en_US multi -> mulch,
mufti
autodock_vina.x86_64: W: spelling-error %description -l en_US autodock -> auto
dock, auto-dock, autodidact
autodock_vina.x86_64: W: spelling-error %description -l en_US Trott -> Trot,
Trots, Trout
autodock_vina.x86_64: W: spelling-error %description -l en_US multithreading ->
multitasking
autodock_vina.src: W: spelling-error %description -l en_US multi -> mulch,
mufti
autodock_vina.src: W: spelling-error %description -l en_US autodock -> auto
dock, auto-dock, autodidact
autodock_vina.src: W: spelling-error %description -l en_US Trott -> Trot,
Trots, Trout
autodock_vina.src: W: spelling-error %description -l en_US multithreading ->
multitasking
2 packages and 0 specfiles checked; 0 errors, 8 warnings.


Requires
--------
autodock_vina (rpmlib, GLIBC filtered):
    libboost_filesystem.so.1.55.0()(64bit)
    libboost_program_options.so.1.55.0()(64bit)
    libboost_serialization.so.1.55.0()(64bit)
    libboost_system.so.1.55.0()(64bit)
    libboost_thread.so.1.55.0()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libgcc_s.so.1(GCC_4.0.0)(64bit)
    libm.so.6()(64bit)
    libpthread.so.0()(64bit)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    rtld(GNU_HASH)



Provides
--------
autodock_vina:
    autodock_vina
    autodock_vina(x86-64)

This looks good.



Source checksums
----------------
http://vina.scripps.edu/download/autodock_vina_1_1_2.tgz :
  CHECKSUM(SHA256) this package     :
b86412d316960b1e4e319401719daf57ff009229d91654d623c3cf09339f6776
  CHECKSUM(SHA256) upstream package :
b86412d316960b1e4e319401719daf57ff009229d91654d623c3cf09339f6776

-- 
You are receiving this mail because:
You are on the CC list for the bug.
You are always notified about changes to this product and component
_______________________________________________
package-review mailing list
package-review@xxxxxxxxxxxxxxxxxxxxxxx
https://admin.fedoraproject.org/mailman/listinfo/package-review





[Index of Archives]     [Fedora Legacy]     [Fedora Desktop]     [Fedora SELinux]     [Yosemite News]     [KDE Users]     [Fedora Tools]