[Bug 1148224] Review Request: mmdb2 - protein coordinate library

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https://bugzilla.redhat.com/show_bug.cgi?id=1148224



--- Comment #5 from Mukundan Ragavan <nonamedotc@xxxxxxxxx> ---
One "major" item I do not understand is this - 

mmdb2.x86_64: W: obsolete-not-provided mmdb


But, this is fine. I see obsoletes in the spec file.

>From the spec file, 

%if 0%{?fedora} >= 21
Obsoletes: mmdb < %{version}-%{release}
%endif

Strange?

Other than that, some minor items. Detailed review below.


Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed


Issues:
=======
- Package uses either %{buildroot} or $RPM_BUILD_ROOT
  Note: Using both %{buildroot} and $RPM_BUILD_ROOT
  See: http://fedoraproject.org/wiki/Packaging/Guidelines#macros


---> Spec clean up?

===== MUST items =====

C/C++:
[x]: Package does not contain kernel modules.
[x]: Package contains no static executables.
[x]: Header files in -devel subpackage, if present.
[x]: ldconfig called in %post and %postun if required.
[x]: Package does not contain any libtool archives (.la)
[x]: Rpath absent or only used for internal libs.
[x]: Development (unversioned) .so files in -devel subpackage, if present.

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses found:
     "LGPL", "GPL (v2 or later)", "*No copyright* LGPL", "Unknown or
     generated". 1 files have unknown license. Detailed output of licensecheck
     in /home/mukundan/ownCloud/pkg_reviews/1148224-mmdb2/licensecheck.txt

---> This looks fine.

[x]: License file installed when any subpackage combination is installed.
[x]: %build honors applicable compiler flags or justifies otherwise.
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
     Note: rm -rf %{buildroot} present but not required

---> Spec clean up/modernize?

[x]: Sources contain only permissible code or content.
[x]: Each %files section contains %defattr if rpm < 4.4
     Note: %defattr present but not needed

---> Spec clean up/modernize?

[-]: Package contains desktop file if it is a GUI application.
[x]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[x]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.

---> Obsoletes are provided for Fedora>=21.

[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Useful -debuginfo package or justification otherwise.
[x]: Package is not known to require an ExcludeArch tag.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 51200 bytes in 3 files.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least one
     supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the license(s)
     in its own file, then that file, containing the text of the license(s)
     for the package is included in %doc.
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: All build dependencies are listed in BuildRequires, except for any that
     are listed in the exceptions section of Packaging Guidelines.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package use %makeinstall only when make install' ' DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package do not use a name that already exist
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as provided
     in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local

===== SHOULD items =====

Generic:
[!]: Sources can be downloaded from URI in Source: tag
     Note: Could not download Source0:
     ftp://ftp.ccp4.ac.uk/opensource/mmdb2-2.0.1.tar.gz
     See: http://fedoraproject.org/wiki/Packaging:Guidelines#Tags

---> I am unable to download it manually either. Is there a problem with
upstream that you are aware of?


[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
     Note: %clean present but not required

---> Spec clean up?

[x]: If the source package does not include license text(s) as a separate file
     from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[x]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[x]: Scriptlets must be sane, if used.
[x]: SourceX tarball generation or download is documented.
     Note: Package contains tarball without URL, check comments
[x]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[x]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed files.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Dist tag is present (not strictly required in GL).
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Fully versioned dependency in subpackages if applicable.
[x]: Uses parallel make %{?_smp_mflags} macro.
[x]: The placement of pkgconfig(.pc) files are correct.
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Large data in /usr/share should live in a noarch subpackage if package is
     arched.
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
Checking: mmdb2-2.0.1-1.fc21.x86_64.rpm
          mmdb2-devel-2.0.1-1.fc21.x86_64.rpm
          mmdb2-2.0.1-1.fc21.src.rpm
mmdb2.x86_64: W: spelling-error Summary(en_US) Macromolecular -> Macro
molecular, Macro-molecular, Molecular
mmdb2.x86_64: W: spelling-error %description -l en_US macromolecular -> macro
molecular, macro-molecular, molecular
mmdb2.x86_64: W: spelling-error %description -l en_US mmCIF -> MCI
mmdb2.x86_64: W: invalid-url URL: ftp://ftp.ccp4.ac.uk/opensource/ <urlopen
error ftp error: timed out>
mmdb2.x86_64: W: obsolete-not-provided mmdb


---> This is fine. I see obsoletes in the spec file.

>From the spec file, 

%if 0%{?fedora} >= 21
Obsoletes: mmdb < %{version}-%{release}
%endif


mmdb2.x86_64: W: shared-lib-calls-exit /usr/lib64/libmmdb2.so.0.0.0
exit@GLIBC_2.2.5

---> Please communicate this to upstream.

mmdb2-devel.x86_64: W: spelling-error %description -l en_US macromolecular ->
macro molecular, macro-molecular, molecular
mmdb2-devel.x86_64: W: invalid-url URL: ftp://ftp.ccp4.ac.uk/opensource/
<urlopen error ftp error: timed out>
mmdb2-devel.x86_64: W: obsolete-not-provided mmdb
mmdb2-devel.x86_64: W: only-non-binary-in-usr-lib
mmdb2-devel.x86_64: W: no-documentation
mmdb2.src: W: spelling-error Summary(en_US) Macromolecular -> Macro molecular,
Macro-molecular, Molecular
mmdb2.src: W: spelling-error %description -l en_US macromolecular -> macro
molecular, macro-molecular, molecular
mmdb2.src: W: spelling-error %description -l en_US mmCIF -> MCI
mmdb2.src: W: spelling-error %description -l en_US mmdb -> mm db, mm-db, DBMS
mmdb2.src: W: invalid-url URL: ftp://ftp.ccp4.ac.uk/opensource/ <urlopen error
ftp error: timed out>
mmdb2.src: W: invalid-url Source0:
ftp://ftp.ccp4.ac.uk/opensource/mmdb2-2.0.1.tar.gz <urlopen error ftp error:
timed out>
3 packages and 0 specfiles checked; 0 errors, 17 warnings.




Rpmlint (installed packages)
----------------------------
# rpmlint mmdb2 mmdb2-devel
mmdb2.x86_64: W: spelling-error Summary(en_US) Macromolecular -> Macro
molecular, Macro-molecular, Molecular
mmdb2.x86_64: W: spelling-error %description -l en_US macromolecular -> macro
molecular, macro-molecular, molecular
mmdb2.x86_64: W: spelling-error %description -l en_US mmCIF -> MCI
mmdb2.x86_64: W: invalid-url URL: ftp://ftp.ccp4.ac.uk/opensource/ <urlopen
error ftp error: timed out>
mmdb2.x86_64: W: obsolete-not-provided mmdb
mmdb2.x86_64: W: shared-lib-calls-exit /usr/lib64/libmmdb2.so.0.0.0
exit@GLIBC_2.2.5
mmdb2-devel.x86_64: W: spelling-error %description -l en_US macromolecular ->
macro molecular, macro-molecular, molecular
mmdb2-devel.x86_64: W: invalid-url URL: ftp://ftp.ccp4.ac.uk/opensource/
<urlopen error ftp error: timed out>
mmdb2-devel.x86_64: W: obsolete-not-provided mmdb
mmdb2-devel.x86_64: W: only-non-binary-in-usr-lib
mmdb2-devel.x86_64: W: no-documentation
2 packages and 0 specfiles checked; 0 errors, 11 warnings.
# echo 'rpmlint-done:'



Requires
--------
mmdb2 (rpmlib, GLIBC filtered):
    /sbin/ldconfig
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libm.so.6()(64bit)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    rtld(GNU_HASH)

mmdb2-devel (rpmlib, GLIBC filtered):
    /usr/bin/pkg-config
    libmmdb2.so.0()(64bit)
    mmdb2(x86-64)
    pkgconfig



Provides
--------
mmdb2:
    libmmdb2.so.0()(64bit)
    mmdb2
    mmdb2(x86-64)

mmdb2-devel:
    mmdb2-devel
    mmdb2-devel(x86-64)
    pkgconfig(mmdb2)



Generated by fedora-review 0.5.2 (63c24cb) last change: 2014-07-14
Command line :/usr/bin/fedora-review -b 1148224
Buildroot used: fedora-21-x86_64
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PHP, Ruby
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