[Bug 1112864] Review Request: elpa - High-performance library for parallel solution of eigenvalue problems

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https://bugzilla.redhat.com/show_bug.cgi?id=1112864



--- Comment #2 from Sandro Mani <manisandro@xxxxxxxxx> ---
Issues:
- A comment why %{?_smp_mflags} is disabled would be nice
- Comment how to obtain source tarball
- Unowned directory issues:
  * No package seems to own %{_libdir}/gfortran (possibly gfortran should do
so?)
  * Same goes with %{_libdir}/*mpi*/pkgconfig
- rpmlint
  * undefined-non-weak-symbol : these should be fixable my linking against the
mpi / gomp libraries
  * unused-direct-shlib-dependency : could try -Wl,--as-needed

Note:
- Spec in SRPM differs


Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed


Issues:
=======
- All build dependencies are listed in BuildRequires, except for any that are
  listed in the exceptions section of Packaging Guidelines.
  Note: These BR are not needed: sed
  See: http://fedoraproject.org/wiki/Packaging/Guidelines#Exceptions_2


===== MUST items =====

C/C++:
[x]: Package does not contain kernel modules.
[x]: Package contains no static executables.
[x]: Package does not contain any libtool archives (.la)
[x]: Rpath absent or only used for internal libs.
[x]: Development (unversioned) .so files in -devel subpackage, if present.

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
[x]: License file installed when any subpackage combination is installed.
[x]: Package requires other packages for directories it uses.
     Note: No known owner of /usr/lib64/gfortran, /usr/lib64/gfortran/modules,
     /usr/lib64/openmpi/lib/pkgconfig, /usr/lib64/gfortran/modules/mpich,
     /usr/lib64/mpich/lib/pkgconfig, /usr/lib64/gfortran/modules/openmpi
     => Not a blocker since there are no packages which provide these
directories
[x]: Package must own all directories that it creates.
     Note: Directories without known owners: /usr/lib64/gfortran,
     /usr/lib64/openmpi/lib, /usr/lib64/gfortran/modules, /usr/lib64/mpich,
     /usr/lib64/mpich/lib, /usr/lib64/openmpi/lib/pkgconfig,
     /usr/lib64/gfortran/modules/mpich, /usr/lib64/mpich/lib/pkgconfig,
     /usr/lib64/openmpi, /usr/lib64/gfortran/modules/openmpi
     => Not a blocker since there are no packages which provide these
directories
[x]: %build honors applicable compiler flags or justifies otherwise.
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[x]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Useful -debuginfo package or justification otherwise.
[x]: Package is not known to require an ExcludeArch tag.
[-]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 61440 bytes in 4 files.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least one
     supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the license(s)
     in its own file, then that file, containing the text of the license(s)
     for the package is included in %doc.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package use %makeinstall only when make install' ' DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package do not use a name that already exist
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as provided
     in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local

===== SHOULD items =====

Generic:
[!]: Uses parallel make %{?_smp_mflags} macro.
[-]: If the source package does not include license text(s) as a separate file
     from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[x]: Fully versioned dependency in subpackages if applicable.
[?]: Package functions as described.
[?]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[x]: Patches link to upstream bugs/comments/lists or are otherwise justified.
[x]: Scriptlets must be sane, if used.
[!]: SourceX tarball generation or download is documented.
     Note: Package contains tarball without URL, check comments
[-]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[?]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed files.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: Dist tag is present (not strictly required in GL).
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: The placement of pkgconfig(.pc) files are correct.
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[!]: Spec file according to URL is the same as in SRPM.
     Note: Spec file as given by url is not the same as in SRPM (see attached
     diff).
     See: (this test has no URL)
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Large data in /usr/share should live in a noarch subpackage if package is
     arched.
[x]: Package should not use obsolete m4 macros


Rpmlint
-------
Checking: elpa-common-2013.11-1.008.fc21.noarch.rpm
          elpa-mpich-2013.11-1.008.fc21.x86_64.rpm
          elpa-mpich-devel-2013.11-1.008.fc21.x86_64.rpm
          elpa-openmpi-2013.11-1.008.fc21.x86_64.rpm
          elpa-openmpi-devel-2013.11-1.008.fc21.x86_64.rpm
          elpa-2013.11-1.008.fc21.src.rpm
elpa-mpich.x86_64: W: no-documentation
elpa-mpich-devel.x86_64: W: only-non-binary-in-usr-lib
elpa-mpich-devel.x86_64: W: no-documentation
elpa-openmpi.x86_64: W: no-documentation
elpa-openmpi-devel.x86_64: W: only-non-binary-in-usr-lib
elpa-openmpi-devel.x86_64: W: no-documentation
elpa.src: W: spelling-error %description -l en_US eigenvector -> convector
elpa.src: W: spelling-error %description -l en_US eigenproblem -> problematic
elpa.src: W: invalid-url Source0: ELPA_2013.11.tar.xz
6 packages and 0 specfiles checked; 0 errors, 9 warnings.




Rpmlint (installed packages)
----------------------------
# rpmlint elpa-mpich-devel elpa-openmpi-devel elpa-common elpa-openmpi
elpa-mpich
elpa-mpich-devel.x86_64: W: only-non-binary-in-usr-lib
elpa-mpich-devel.x86_64: W: no-documentation
elpa-openmpi-devel.x86_64: W: only-non-binary-in-usr-lib
elpa-openmpi-devel.x86_64: W: no-documentation
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_reduce_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_isend_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_comm_split_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_abort_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_test_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_comm_rank_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_sendrecv_replace_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_wait_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_wtime_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_waitall_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_sendrecv_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_irecv_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_barrier_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_alltoallv_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_recv_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_send_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_allreduce_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_comm_size_
elpa-openmpi.x86_64: W: undefined-non-weak-symbol
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 mpi_bcast_
elpa-openmpi.x86_64: W: unused-direct-shlib-dependency
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 libscalapack.so.2
elpa-openmpi.x86_64: W: unused-direct-shlib-dependency
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 libmpiblacs.so.2
elpa-openmpi.x86_64: W: unused-direct-shlib-dependency
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 /lib64/libstdc++.so.6
elpa-openmpi.x86_64: W: unused-direct-shlib-dependency
/usr/lib64/openmpi/lib/libelpa.so.0.0.0 /lib64/libgcc_s.so.1
elpa-openmpi.x86_64: W: no-documentation
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_reduce_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 GOMP_parallel
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_isend_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_comm_split_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_abort_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_test_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_comm_rank_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_sendrecv_replace_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_wait_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_wtime_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 omp_get_thread_num_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_waitall_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_sendrecv_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_irecv_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_barrier_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 omp_get_num_threads_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 omp_get_num_threads
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_alltoallv_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_recv_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_send_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_allreduce_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 omp_get_max_threads_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 GOMP_barrier
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_comm_size_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 omp_get_thread_num
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 mpi_bcast_
elpa-mpich.x86_64: W: unused-direct-shlib-dependency
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 libscalapack.so.2
elpa-mpich.x86_64: W: unused-direct-shlib-dependency
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 libmpiblacs.so.2
elpa-mpich.x86_64: W: unused-direct-shlib-dependency
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 /lib64/libstdc++.so.6
elpa-mpich.x86_64: W: unused-direct-shlib-dependency
/usr/lib64/mpich/lib/libelpa_mt.so.0.0.0 /lib64/libgcc_s.so.1
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_reduce_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_isend_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_comm_split_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_abort_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_test_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_comm_rank_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_sendrecv_replace_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_wait_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_wtime_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_waitall_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_sendrecv_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_irecv_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_barrier_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_alltoallv_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_recv_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_send_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_allreduce_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_comm_size_
elpa-mpich.x86_64: W: undefined-non-weak-symbol
/usr/lib64/mpich/lib/libelpa.so.0.0.0 mpi_bcast_
elpa-mpich.x86_64: W: unused-direct-shlib-dependency
/usr/lib64/mpich/lib/libelpa.so.0.0.0 libscalapack.so.2
elpa-mpich.x86_64: W: unused-direct-shlib-dependency
/usr/lib64/mpich/lib/libelpa.so.0.0.0 libmpiblacs.so.2
elpa-mpich.x86_64: W: unused-direct-shlib-dependency
/usr/lib64/mpich/lib/libelpa.so.0.0.0 /lib64/libstdc++.so.6
elpa-mpich.x86_64: W: unused-direct-shlib-dependency
/usr/lib64/mpich/lib/libelpa.so.0.0.0 /lib64/libgcc_s.so.1
elpa-mpich.x86_64: W: no-documentation
5 packages and 0 specfiles checked; 0 errors, 82 warnings.
# echo 'rpmlint-done:'



Diff spec file in url and in SRPM
---------------------------------
--- /home/sandro/.Data/Desktop/1112864-elpa/srpm/elpa.spec    2014-06-25
15:52:47.784991580 +0200
+++ /home/sandro/.Data/Desktop/1112864-elpa/srpm-unpacked/elpa.spec   
2014-06-24 10:56:21.000000000 +0200
@@ -195,5 +195,4 @@
 rm %{buildroot}%{_bindir}/test*

-%if 0
 %check
 %{_mpich_load}
@@ -212,5 +211,4 @@
 popd
 %{_openmpi_unload}
-%endif

 %post mpich -p /sbin/ldconfig


Requires
--------
elpa-mpich-devel (rpmlib, GLIBC filtered):
    elpa-mpich(x86-64)
    libelpa.so.0()(64bit)
    libelpa_mt.so.0()(64bit)

elpa-openmpi-devel (rpmlib, GLIBC filtered):
    elpa-openmpi(x86-64)
    libelpa.so.0()(64bit)

elpa-common (rpmlib, GLIBC filtered):

elpa-openmpi (rpmlib, GLIBC filtered):
    /sbin/ldconfig
    blacs-openmpi
    elpa-common
    libblas.so.3()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    liblapack.so.3()(64bit)
    libm.so.6()(64bit)
    libmpiblacs.so.2()(64bit)
    libscalapack.so.2()(64bit)
    libstdc++.so.6()(64bit)
    rtld(GNU_HASH)
    scalapack-openmpi

elpa-mpich (rpmlib, GLIBC filtered):
    /sbin/ldconfig
    blacs-mpich
    elpa-common
    libblas.so.3()(64bit)
    libc.so.6()(64bit)
    libgcc_s.so.1()(64bit)
    liblapack.so.3()(64bit)
    libm.so.6()(64bit)
    libmpiblacs.so.2()(64bit)
    libscalapack.so.2()(64bit)
    libstdc++.so.6()(64bit)
    rtld(GNU_HASH)
    scalapack-mpich



Provides
--------
elpa-mpich-devel:
    elpa-mpich-devel
    elpa-mpich-devel(x86-64)

elpa-openmpi-devel:
    elpa-openmpi-devel
    elpa-openmpi-devel(x86-64)

elpa-common:
    elpa-common

elpa-openmpi:
    elpa-openmpi
    elpa-openmpi(x86-64)
    libelpa.so.0()(64bit)

elpa-mpich:
    elpa-mpich
    elpa-mpich(x86-64)
    libelpa.so.0()(64bit)
    libelpa_mt.so.0()(64bit)



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