[Bug 234573] Review Request: perl-bioperl - A package of Perl tools for computational molecular biology

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Summary: Review Request: perl-bioperl - A package of Perl tools for computational molecular biology
Alias: perl-bioperl

https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573


panemade@xxxxxxxxx changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
               Flag|fedora-review?              |fedora-review+




------- Additional Comments From panemade@xxxxxxxxx  2007-04-03 06:36 EST -------
Review:
+ package builds in mock (development i386).
+ rpmlint is silent for SRPM and for RPM.
+ source files match upstream url
71f22246979ee5d6e19d547319962eea  bioperl-1.5.2_102.tar.bz2
+ package meets naming and packaging guidelines.
+ specfile is properly named, is cleanly written
+ Spec file is written in American English.
+ Spec file is legible.
+ dist tag is present.
+ build root is correct.
+ license is open source-compatible.
+ License text is included in package.
+ %doc is present.
+ BuildRequires are proper.
+ %clean is present.
+ package installed properly.
+ Macro use appears rather consistent.
+ Package contains code, not content.
+ no headers or static libraries.
+ no .pc file present.
+ no -devel subpackage
+ no .la files.
+ no translations are available
+ Does owns the directories it creates.
+ no scriptlets present.
+ no duplicates in %files.
+ file permissions are appropriate.
+ make test disabled.
+ Provides: perl(Bio::Align::AlignI) perl(Bio::Align::DNAStatistics)
perl(Bio::Align::PairwiseStatistics) perl(Bio::Align::ProteinStatistics)
perl(Bio::Align::StatisticsI) perl(Bio::Align::Utilities) perl(Bio::AlignIO)
perl(Bio::AlignIO::bl2seq) perl(Bio::AlignIO::clustalw)
perl(Bio::AlignIO::emboss) perl(Bio::AlignIO::fasta)
perl(Bio::AlignIO::largemultifasta) perl(Bio::AlignIO::maf)
perl(Bio::AlignIO::mase) perl(Bio::AlignIO::mega) perl(Bio::AlignIO::meme)
perl(Bio::AlignIO::metafasta) perl(Bio::AlignIO::msf) perl(Bio::AlignIO::nexus)
perl(Bio::AlignIO::pfam) perl(Bio::AlignIO::phylip) perl(Bio::AlignIO::po)
perl(Bio::AlignIO::prodom) perl(Bio::AlignIO::psi) perl(Bio::AlignIO::selex)
perl(Bio::AlignIO::stockholm) perl(Bio::AnalysisI) perl(Bio::AnalysisI::JobI)
perl(Bio::AnalysisParserI) perl(Bio::AnalysisResultI) perl(Bio::AnnotatableI)
perl(Bio::Annotation::AnnotationFactory) perl(Bio::Annotation::Collection)
perl(Bio::Annotation::Comment) perl(Bio::Annotation::DBLink)
perl(Bio::Annotation::OntologyTerm) perl(Bio::Annotation::Reference)
perl(Bio::Annotation::SimpleValue) perl(Bio::Annotation::StructuredValue)
perl(Bio::Annotation::Target) perl(Bio::Annotation::TypeManager)
perl(Bio::AnnotationCollectionI) perl(Bio::AnnotationI)
perl(Bio::Assembly::Contig) perl(Bio::Assembly::ContigAnalysis)
perl(Bio::Assembly::IO) perl(Bio::Assembly::IO::ace)
perl(Bio::Assembly::IO::phrap) perl(Bio::Assembly::Scaffold)
perl(Bio::Assembly::ScaffoldI) perl(Bio::Assembly::Singlet) perl(Bio::Biblio)
perl(Bio::Biblio::Article) perl(Bio::Biblio::BiblioBase) perl(Bio::Biblio::Book)
perl(Bio::Biblio::BookArticle) perl(Bio::Biblio::IO)
perl(Bio::Biblio::IO::medline2ref) perl(Bio::Biblio::IO::medlinexml)
perl(Bio::Biblio::IO::pubmed2ref) perl(Bio::Biblio::IO::pubmedxml)
perl(Bio::Biblio::Journal) perl(Bio::Biblio::JournalArticle)
perl(Bio::Biblio::MedlineArticle) perl(Bio::Biblio::MedlineBook)
perl(Bio::Biblio::MedlineBookArticle) perl(Bio::Biblio::MedlineJournal)
perl(Bio::Biblio::MedlineJournalArticle) perl(Bio::Biblio::Organisation)
perl(Bio::Biblio::Patent) perl(Bio::Biblio::Person)
perl(Bio::Biblio::Proceeding) perl(Bio::Biblio::Provider)
perl(Bio::Biblio::PubmedArticle) perl(Bio::Biblio::PubmedBookArticle)
perl(Bio::Biblio::PubmedJournalArticle) perl(Bio::Biblio::Ref)
perl(Bio::Biblio::Service) perl(Bio::Biblio::TechReport)
perl(Bio::Biblio::Thesis) perl(Bio::Biblio::WebResource)
perl(Bio::Cluster::ClusterFactory) perl(Bio::Cluster::FamilyI)
perl(Bio::Cluster::SequenceFamily) perl(Bio::Cluster::UniGene)
perl(Bio::Cluster::UniGeneI) perl(Bio::ClusterI) perl(Bio::ClusterIO)
perl(Bio::ClusterIO::dbsnp) perl(Bio::ClusterIO::unigene)
perl(Bio::CodonUsage::IO) perl(Bio::CodonUsage::Table) perl(Bio::ConfigData)
perl(Bio::Coordinate::Chain) perl(Bio::Coordinate::Collection)
perl(Bio::Coordinate::ExtrapolatingPair) perl(Bio::Coordinate::GeneMapper)
perl(Bio::Coordinate::Graph) perl(Bio::Coordinate::MapperI)
perl(Bio::Coordinate::Pair) perl(Bio::Coordinate::Result)
perl(Bio::Coordinate::Result::Gap) perl(Bio::Coordinate::Result::Match)
perl(Bio::Coordinate::ResultI) perl(Bio::Coordinate::Utils) perl(Bio::DB::Ace)
perl(Bio::DB::Biblio::biofetch) perl(Bio::DB::Biblio::eutils)
perl(Bio::DB::Biblio::pdf) perl(Bio::DB::Biblio::soap) perl(Bio::DB::BiblioI)
perl(Bio::DB::BioFetch) perl(Bio::DB::CUTG) perl(Bio::DB::DBFetch)
perl(Bio::DB::EMBL) perl(Bio::DB::EUtilities) perl(Bio::DB::EUtilities::Cookie)
perl(Bio::DB::EUtilities::ElinkData) perl(Bio::DB::EUtilities::efetch)
perl(Bio::DB::EUtilities::egquery) perl(Bio::DB::EUtilities::einfo)
perl(Bio::DB::EUtilities::elink) perl(Bio::DB::EUtilities::epost)
perl(Bio::DB::EUtilities::esearch) perl(Bio::DB::EUtilities::esummary)
perl(Bio::DB::EntrezGene) perl(Bio::DB::Expression)
perl(Bio::DB::Expression::geo) perl(Bio::DB::Failover) perl(Bio::DB::Fasta)
perl(Bio::DB::Fasta::Stream) perl(Bio::DB::FileCache) perl(Bio::DB::Flat)
perl(Bio::DB::Flat::BDB) perl(Bio::DB::Flat::BDB::embl)
perl(Bio::DB::Flat::BDB::fasta) perl(Bio::DB::Flat::BDB::genbank)
perl(Bio::DB::Flat::BDB::swiss) perl(Bio::DB::Flat::BDB::swissprot)
perl(Bio::DB::Flat::BinarySearch) perl(Bio::DB::GDB) perl(Bio::DB::GFF)
perl(Bio::DB::GFF::Adaptor::ace) perl(Bio::DB::GFF::Adaptor::berkeleydb)
perl(Bio::DB::GFF::Adaptor::berkeleydb::iterator)
perl(Bio::DB::GFF::Adaptor::biofetch)
perl(Bio::DB::GFF::Adaptor::biofetch_oracle) perl(Bio::DB::GFF::Adaptor::dbi)
perl(Bio::DB::GFF::Adaptor::dbi::caching_handle)
perl(Bio::DB::GFF::Adaptor::dbi::faux_dbh)

APPROVED.

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