[Bug 984605] Review Request: nwchem - Delivering High-Performance Computational Chemistry

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https://bugzilla.redhat.com/show_bug.cgi?id=984605



--- Comment #24 from Antonio Trande <anto.trande@xxxxxxxxx> ---
- 'common' subpackage contains data files and should be a 'noarch' package
-  License file is missing if you don't install basic package (nwchem).
   Add '%doc LICENSE.txt' to %files in nwchem-common
- '/etc/profile.d' directory is owned by 'setup' package. Please, list all
files
  installed within it explicitely
- ExcludeArch tag issue: the ARM package is not built (see comment#22)
- Many tests are not passed. Decide if it's convenient for you to execute them
or not.
- Please, fix the 'summary-too-long' errors.

Additional notes:

- newchem building does not use all OPTFLAGS requested by Fedora Packaging
Guidelines because 
they seem compromise the software functionalities; upstream maintainers said in 
INSTALL file:

   "The basic build tries to optimize NWChem for most systems and
   most operating systems.  Therefore, possible optimizations have
   been excluded." 

- nwchem compiles/uses but does not distribute managed/optimized versions of GA
package.

Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed



===== MUST items =====

C/C++:
[x]: Package does not contain kernel modules.
[x]: Package contains no static executables.
[x]: Package does not contain any libtool archives (.la)
[x]: Rpath absent or only used for internal libs.

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses found:
     "GPL (v2 or later)", "Unknown or generated", "BSD (4 clause)", "LGPL (v2
     or later) (with incorrect FSF address)", "*No copyright* Public domain",
     "BSD (3 clause)", "BSD (2 clause)". 4064 files have unknown license.
     Detailed output of licensecheck in /home/sagitter/nwchem/licensecheck.txt
[!]: License file installed when any subpackage combination is installed.
[!]: Package must own all directories that it creates.
     Note: Directories without known owners: /etc/profile.d
[?]: %build honors applicable compiler flags or justifies otherwise.
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[-]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Useful -debuginfo package or justification otherwise.
[!]: Package is not known to require an ExcludeArch tag.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 10240 bytes in 1 files.
[!]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least one
     supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the license(s)
     in its own file, then that file, containing the text of the license(s)
     for the package is included in %doc.
[x]: Package requires other packages for directories it uses.
[x]: Package does not own files or directories owned by other packages.
[x]: All build dependencies are listed in BuildRequires, except for any that
     are listed in the exceptions section of Packaging Guidelines.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package use %makeinstall only when make install' ' DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package do not use a name that already exist
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as provided
     in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local

===== SHOULD items =====

Generic:
[x]: If the source package does not include license text(s) as a separate file
     from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[x]: Fully versioned dependency in subpackages if applicable.
     Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in nwchem-
     openmpi , nwchem-mpich , nwchem-common
[ ]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[-]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[!]: Package should compile and build into binary rpms on all supported
     architectures.
[!]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed files.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: Dist tag is present (not strictly required in GL).
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[!]: Large data in /usr/share should live in a noarch subpackage if package is
     arched.
     Note: Arch-ed rpms have a total of 40038400 bytes in /usr/share nwchem-
     common-6.3.2-4.fc21.i686.rpm:40028160
     See:
    
http://fedoraproject.org/wiki/Packaging:ReviewGuidelines#Package_Review_Guidelines
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).


Rpmlint
-------
Checking: nwchem-6.3.2-4.fc21.i686.rpm
          nwchem-openmpi-6.3.2-4.fc21.i686.rpm
          nwchem-mpich-6.3.2-4.fc21.i686.rpm
          nwchem-common-6.3.2-4.fc21.i686.rpm
          nwchem-6.3.2-4.fc21.src.rpm
nwchem.i686: W: spelling-error %description -l en_US scalable -> salable,
callable, calculable
nwchem.i686: W: spelling-error %description -l en_US Valiev -> Valise
nwchem.i686: W: spelling-error %description -l en_US Bylaska -> Alaska
nwchem.i686: W: spelling-error %description -l en_US Govind -> Gov ind,
Gov-ind, Indigo
nwchem.i686: W: spelling-error %description -l en_US Kowalski -> Malinowski
nwchem.i686: W: spelling-error %description -l en_US Straatsma -> Stratum
nwchem.i686: W: spelling-error %description -l en_US Nieplocha -> Epochal
nwchem.i686: W: spelling-error %description -l en_US Apra -> Apr, Ara, Apia
nwchem.i686: W: spelling-error %description -l en_US Windus -> Hindus, Winds,
Windups
nwchem.i686: W: spelling-error %description -l en_US de -> DE, ed, d
nwchem.i686: W: spelling-error %description -l en_US Commun -> Com mun,
Com-mun, Commune
nwchem.i686: W: no-manual-page-for-binary nwchem
nwchem-openmpi.i686: W: spelling-error %description -l en_US scalable ->
salable, callable, calculable
nwchem-openmpi.i686: W: spelling-error %description -l en_US Valiev -> Valise
nwchem-openmpi.i686: W: spelling-error %description -l en_US Bylaska -> Alaska
nwchem-openmpi.i686: W: spelling-error %description -l en_US Govind -> Gov ind,
Gov-ind, Indigo
nwchem-openmpi.i686: W: spelling-error %description -l en_US Kowalski ->
Malinowski
nwchem-openmpi.i686: W: spelling-error %description -l en_US Straatsma ->
Stratum
nwchem-openmpi.i686: W: spelling-error %description -l en_US Nieplocha ->
Epochal
nwchem-openmpi.i686: W: spelling-error %description -l en_US Apra -> Apr, Ara,
Apia
nwchem-openmpi.i686: W: spelling-error %description -l en_US Windus -> Hindus,
Winds, Windups
nwchem-openmpi.i686: W: spelling-error %description -l en_US de -> DE, ed, d
nwchem-openmpi.i686: W: spelling-error %description -l en_US Commun -> Com mun,
Com-mun, Commune
nwchem-openmpi.i686: W: no-documentation
nwchem-mpich.i686: W: spelling-error Summary(en_US) openmpi -> opening
nwchem-mpich.i686: E: summary-too-long C Delivering High-Performance
Computational Chemistry to Science - openmpi version - mpich version
nwchem-mpich.i686: W: spelling-error %description -l en_US scalable -> salable,
callable, calculable
nwchem-mpich.i686: W: spelling-error %description -l en_US Valiev -> Valise
nwchem-mpich.i686: W: spelling-error %description -l en_US Bylaska -> Alaska
nwchem-mpich.i686: W: spelling-error %description -l en_US Govind -> Gov ind,
Gov-ind, Indigo
nwchem-mpich.i686: W: spelling-error %description -l en_US Kowalski ->
Malinowski
nwchem-mpich.i686: W: spelling-error %description -l en_US Straatsma -> Stratum
nwchem-mpich.i686: W: spelling-error %description -l en_US Nieplocha -> Epochal
nwchem-mpich.i686: W: spelling-error %description -l en_US Apra -> Apr, Ara,
Apia
nwchem-mpich.i686: W: spelling-error %description -l en_US Windus -> Hindus,
Winds, Windups
nwchem-mpich.i686: W: spelling-error %description -l en_US de -> DE, ed, d
nwchem-mpich.i686: W: spelling-error %description -l en_US Commun -> Com mun,
Com-mun, Commune
nwchem-mpich.i686: W: no-documentation
nwchem-common.i686: W: spelling-error Summary(en_US) openmpi -> opening
nwchem-common.i686: W: spelling-error Summary(en_US) mpich -> chimp
nwchem-common.i686: E: summary-too-long C Delivering High-Performance
Computational Chemistry to Science - openmpi version - mpich version - common
files
nwchem-common.i686: W: spelling-error %description -l en_US scalable ->
salable, callable, calculable
nwchem-common.i686: W: spelling-error %description -l en_US Valiev -> Valise
nwchem-common.i686: W: spelling-error %description -l en_US Bylaska -> Alaska
nwchem-common.i686: W: spelling-error %description -l en_US Govind -> Gov ind,
Gov-ind, Indigo
nwchem-common.i686: W: spelling-error %description -l en_US Kowalski ->
Malinowski
nwchem-common.i686: W: spelling-error %description -l en_US Straatsma ->
Stratum
nwchem-common.i686: W: spelling-error %description -l en_US Nieplocha ->
Epochal
nwchem-common.i686: W: spelling-error %description -l en_US Apra -> Apr, Ara,
Apia
nwchem-common.i686: W: spelling-error %description -l en_US Windus -> Hindus,
Winds, Windups
nwchem-common.i686: W: spelling-error %description -l en_US de -> DE, ed, d
nwchem-common.i686: W: spelling-error %description -l en_US Commun -> Com mun,
Com-mun, Commune
nwchem-common.i686: W: no-documentation
nwchem-common.i686: W: non-conffile-in-etc /etc/profile.d/nwchem.sh
nwchem-common.i686: W: non-conffile-in-etc /etc/profile.d/nwchem.csh
nwchem.src: W: spelling-error %description -l en_US scalable -> salable,
callable, calculable
nwchem.src: W: spelling-error %description -l en_US Valiev -> Valise
nwchem.src: W: spelling-error %description -l en_US Bylaska -> Alaska
nwchem.src: W: spelling-error %description -l en_US Govind -> Gov ind, Gov-ind,
Indigo
nwchem.src: W: spelling-error %description -l en_US Kowalski -> Malinowski
nwchem.src: W: spelling-error %description -l en_US Straatsma -> Stratum
nwchem.src: W: spelling-error %description -l en_US Nieplocha -> Epochal
nwchem.src: W: spelling-error %description -l en_US Apra -> Apr, Ara, Apia
nwchem.src: W: spelling-error %description -l en_US Windus -> Hindus, Winds,
Windups
nwchem.src: W: spelling-error %description -l en_US de -> DE, ed, d
nwchem.src: W: spelling-error %description -l en_US Commun -> Com mun, Com-mun,
Commune
5 packages and 0 specfiles checked; 2 errors, 64 warnings.




Rpmlint (installed packages)
----------------------------
# rpmlint nwchem nwchem-common nwchem-openmpi nwchem-mpich
nwchem.i686: W: spelling-error %description -l en_US scalable -> salable,
callable, calculable
nwchem.i686: W: spelling-error %description -l en_US Valiev -> Valise
nwchem.i686: W: spelling-error %description -l en_US Bylaska -> Alaska
nwchem.i686: W: spelling-error %description -l en_US Govind -> Gov ind,
Gov-ind, Indigo
nwchem.i686: W: spelling-error %description -l en_US Kowalski -> Malinowski
nwchem.i686: W: spelling-error %description -l en_US Straatsma -> Stratagem
nwchem.i686: W: spelling-error %description -l en_US Nieplocha -> Epochal
nwchem.i686: W: spelling-error %description -l en_US Apra -> Apr, Ara, Apia
nwchem.i686: W: spelling-error %description -l en_US Windus -> Hindus, Winds,
Windups
nwchem.i686: W: spelling-error %description -l en_US de -> DE, ed, d
nwchem.i686: W: spelling-error %description -l en_US Commun -> Com mun,
Com-mun, Commune
nwchem.i686: W: no-manual-page-for-binary nwchem
nwchem-common.i686: W: spelling-error Summary(en_US) openmpi -> opening
nwchem-common.i686: W: spelling-error Summary(en_US) mpich -> chimp
nwchem-common.i686: E: summary-too-long C Delivering High-Performance
Computational Chemistry to Science - openmpi version - mpich version - common
files
nwchem-common.i686: W: spelling-error %description -l en_US scalable ->
salable, callable, calculable
nwchem-common.i686: W: spelling-error %description -l en_US Valiev -> Valise
nwchem-common.i686: W: spelling-error %description -l en_US Bylaska -> Alaska
nwchem-common.i686: W: spelling-error %description -l en_US Govind -> Gov ind,
Gov-ind, Indigo
nwchem-common.i686: W: spelling-error %description -l en_US Kowalski ->
Malinowski
nwchem-common.i686: W: spelling-error %description -l en_US Straatsma ->
Stratagem
nwchem-common.i686: W: spelling-error %description -l en_US Nieplocha ->
Epochal
nwchem-common.i686: W: spelling-error %description -l en_US Apra -> Apr, Ara,
Apia
nwchem-common.i686: W: spelling-error %description -l en_US Windus -> Hindus,
Winds, Windups
nwchem-common.i686: W: spelling-error %description -l en_US de -> DE, ed, d
nwchem-common.i686: W: spelling-error %description -l en_US Commun -> Com mun,
Com-mun, Commune
nwchem-common.i686: W: no-documentation
nwchem-common.i686: W: non-conffile-in-etc /etc/profile.d/nwchem.sh
nwchem-common.i686: W: non-conffile-in-etc /etc/profile.d/nwchem.csh
nwchem-openmpi.i686: W: spelling-error %description -l en_US scalable ->
salable, callable, calculable
nwchem-openmpi.i686: W: spelling-error %description -l en_US Valiev -> Valise
nwchem-openmpi.i686: W: spelling-error %description -l en_US Bylaska -> Alaska
nwchem-openmpi.i686: W: spelling-error %description -l en_US Govind -> Gov ind,
Gov-ind, Indigo
nwchem-openmpi.i686: W: spelling-error %description -l en_US Kowalski ->
Malinowski
nwchem-openmpi.i686: W: spelling-error %description -l en_US Straatsma ->
Stratagem
nwchem-openmpi.i686: W: spelling-error %description -l en_US Nieplocha ->
Epochal
nwchem-openmpi.i686: W: spelling-error %description -l en_US Apra -> Apr, Ara,
Apia
nwchem-openmpi.i686: W: spelling-error %description -l en_US Windus -> Hindus,
Winds, Windups
nwchem-openmpi.i686: W: spelling-error %description -l en_US de -> DE, ed, d
nwchem-openmpi.i686: W: spelling-error %description -l en_US Commun -> Com mun,
Com-mun, Commune
nwchem-openmpi.i686: W: no-documentation
nwchem-mpich.i686: W: spelling-error Summary(en_US) openmpi -> opening
nwchem-mpich.i686: E: summary-too-long C Delivering High-Performance
Computational Chemistry to Science - openmpi version - mpich version
nwchem-mpich.i686: W: spelling-error %description -l en_US scalable -> salable,
callable, calculable
nwchem-mpich.i686: W: spelling-error %description -l en_US Valiev -> Valise
nwchem-mpich.i686: W: spelling-error %description -l en_US Bylaska -> Alaska
nwchem-mpich.i686: W: spelling-error %description -l en_US Govind -> Gov ind,
Gov-ind, Indigo
nwchem-mpich.i686: W: spelling-error %description -l en_US Kowalski ->
Malinowski
nwchem-mpich.i686: W: spelling-error %description -l en_US Straatsma ->
Stratagem
nwchem-mpich.i686: W: spelling-error %description -l en_US Nieplocha -> Epochal
nwchem-mpich.i686: W: spelling-error %description -l en_US Apra -> Apr, Ara,
Apia
nwchem-mpich.i686: W: spelling-error %description -l en_US Windus -> Hindus,
Winds, Windups
nwchem-mpich.i686: W: spelling-error %description -l en_US de -> DE, ed, d
nwchem-mpich.i686: W: spelling-error %description -l en_US Commun -> Com mun,
Com-mun, Commune
nwchem-mpich.i686: W: no-documentation
4 packages and 0 specfiles checked; 2 errors, 53 warnings.
# echo 'rpmlint-done:'



Requires
--------
nwchem (rpmlib, GLIBC filtered):
    libc.so.6
    libdl.so.2
    libgcc_s.so.1
    libgcc_s.so.1(GCC_4.0.0)
    libgfortran.so.3
    libgfortran.so.3(GFORTRAN_1.0)
    libgfortran.so.3(GFORTRAN_1.4)
    libm.so.6
    libncurses.so.5
    libpthread.so.0
    libpython2.7.so.1.0
    libquadmath.so.0
    libreadline.so.6
    libsysfs.so.2
    libtatlas.so.3
    libtinfo.so.5
    libutil.so.1
    libz.so.1
    nwchem-common
    openssh-clients
    rtld(GNU_HASH)

nwchem-common (rpmlib, GLIBC filtered):

nwchem-openmpi (rpmlib, GLIBC filtered):
    libc.so.6
    libdl.so.2
    libgcc_s.so.1
    libgcc_s.so.1(GCC_4.0.0)
    libgfortran.so.3
    libgfortran.so.3(GFORTRAN_1.0)
    libgfortran.so.3(GFORTRAN_1.4)
    libm.so.6
    libmpi.so.1
    libmpi_mpifh.so.2
    libmpi_usempi.so.1
    libncurses.so.5
    libpthread.so.0
    libpython2.7.so.1.0
    libquadmath.so.0
    libreadline.so.6
    libsysfs.so.2
    libtatlas.so.3
    libtinfo.so.5
    libutil.so.1
    libz.so.1
    nwchem-common
    openmpi
    rtld(GNU_HASH)

nwchem-mpich (rpmlib, GLIBC filtered):
    libc.so.6
    libdl.so.2
    libgcc_s.so.1
    libgcc_s.so.1(GCC_4.0.0)
    libgfortran.so.3
    libgfortran.so.3(GFORTRAN_1.0)
    libgfortran.so.3(GFORTRAN_1.4)
    libm.so.6
    libmpich.so.10
    libncurses.so.5
    libpthread.so.0
    libpython2.7.so.1.0
    libquadmath.so.0
    libreadline.so.6
    libsysfs.so.2
    libtatlas.so.3
    libtinfo.so.5
    libutil.so.1
    libz.so.1
    mpich
    nwchem-common
    rtld(GNU_HASH)



Provides
--------
nwchem:
    nwchem
    nwchem(x86-32)

nwchem-common:
    nwchem-common
    nwchem-common(x86-32)

nwchem-openmpi:
    nwchem-openmpi
    nwchem-openmpi(x86-32)

nwchem-mpich:
    nwchem-mpich
    nwchem-mpich(x86-32)



Source checksums
----------------
http://www.nwchem-sw.org/images/Nwchem-6.3.revision2-src.2013-10-17.tar.gz :
  CHECKSUM(SHA256) this package     :
6a6adf068d559be1ab1bf0addc6b8aa65dbb746b8716a913f5f1bb2eb16f1718
  CHECKSUM(SHA256) upstream package :
6a6adf068d559be1ab1bf0addc6b8aa65dbb746b8716a913f5f1bb2eb16f1718


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