[Bug 841266] Review Request: plink - whole genome association analysis toolset

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https://bugzilla.redhat.com/show_bug.cgi?id=841266

--- Comment #19 from Jason Tibbitts <tibbs@xxxxxxxxxxx> ---
There are only very limited situations where it is permissible to modify the
upstream source archive.  Basically when we cannot distribute some part of it
due to legal reasons.

Please either detail the legal reasons why we cannot redistribute the upstream
source archive as is, or fix this package to use the archive unmodified.  You
can of course remove the unneeded jar file in %prep, and I suppose you could
add the autoconf stuff there as well though generally we frown on such things. 
Could you detail the specific reasons why the upstream makefile is not useful,
and cannot be minimally fixed with basic patching?

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