[Bug 895667] Review Request: polymake - Algorithms on convex polytopes and polyhedra

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Product: Fedora
https://bugzilla.redhat.com/show_bug.cgi?id=895667

--- Comment #8 from Paulo Andrade <paulo.cesar.pereira.de.andrade@xxxxxxxxx> ---
The upstream thread I asked for information is
http://forum.polymake.org/viewtopic.php?f=9&t=310

Result of a newer run:
---%<---

Package Review
==============

Key:
[x] = Pass
[!] = Fail
[-] = Not applicable
[?] = Not evaluated
[ ] = Manual review needed


Issues:
=======
[!]: Large documentation must go in a -doc subpackage.
     Note: Documentation size is 2969600 bytes in 32 files.
See: http://fedoraproject.org/wiki/Packaging/Guidelines#PackageDocumentation


===== MUST items =====

C/C++:
[x]: Header files in -devel subpackage, if present.
[x]: ldconfig called in %post and %postun if required.
[x]: Package does not contain any libtool archives (.la)
[x]: Package does not contain kernel modules.
[x]: Package contains no static executables.
[?]: Rpath absent or only used for internal libs.
[x]: Development (unversioned) .so files in -devel subpackage, if present.
     Note: Unversioned so-files in private %_libdir subdirectory (see
     attachment). Verify they are not in ld path.

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: Package successfully compiles and builds into binary rpms on at least one
     supported primary architecture.
[x]: %build honors applicable compiler flags or justifies otherwise.
[x]: All build dependencies are listed in BuildRequires, except for any that
     are listed in the exceptions section of Packaging Guidelines.
[x]: Package contains no bundled libraries.
[x]: Changelog in prescribed format.
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Sources contain only permissible code or content.
[x]: Each %files section contains %defattr if rpm < 4.4
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Package contains desktop file if it is a GUI application.
[x]: Development files must be in a -devel package
[x]: Package requires other packages for directories it uses.
[x]: Package uses nothing in %doc for runtime.
[x]: Package is not known to require ExcludeArch.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Fully versioned dependency in subpackages, if present.
     Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in %package
     devel, %package doc
[x]: Package complies to the Packaging Guidelines
[x]: Spec file lacks Packager, Vendor, PreReq tags.
[x]: If (and only if) the source package includes the text of the license(s)
     in its own file, then that file, containing the text of the license(s)
     for the package is included in %doc.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses found:
     "BSD (3 clause)", "BSD (2 clause)", "GPL (v2 or later)", "Unknown or
     generated". 4 files have unknown license. Detailed output of licensecheck
     in /home/pcpa/895667-polymake/licensecheck.txt
[x]: License file installed when any subpackage combination is installed.
[x]: Package consistently uses macro is (instead of hard-coded directory
     names).
[x]: Package is named using only allowed ASCII characters.
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
     Note: Package contains no Conflicts: tag(s)
[x]: Package do not use a name that already exist
[x]: Package obeys FHS, except libexecdir and /usr/target.
[x]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: Package installs properly.
[x]: Package is not relocatable.
[x]: Requires correct, justified where necessary.
[x]: CheckResultdir
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: Sources used to build the package match the upstream source, as provided
     in the spec URL.
[x]: Spec file is legible and written in American English.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: Package contains systemd file(s) if in need.
[x]: File names are valid UTF-8.
[x]: Useful -debuginfo package or justification otherwise.
[!]: Large documentation must go in a -doc subpackage.
     Note: Documentation size is 2969600 bytes in 32 files.
[x]: Packages must not store files under /srv, /opt or /usr/local

Perl:
[x]: Package contains the mandatory BuildRequires and Reguires:.
[-]: CPAN urls should be non-versioned.
     Note: Test run failed

===== SHOULD items =====

Generic:
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: If the source package does not include license text(s) as a separate file
     from upstream, the packager SHOULD query upstream to include it.
[x]: Dist tag is present.
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[ ]: Final provides and requires are sane (rpm -q --provides and rpm -q
     --requires).
[x]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[x]: Patches link to upstream bugs/comments/lists or are otherwise justified.
[x]: The placement of pkgconfig(.pc) files are correct.
[x]: Scriptlets must be sane, if used.
[x]: SourceX tarball generation or download is documented.
[x]: SourceX / PatchY prefixed with %{name}.
[x]: SourceX is a working URL.
[x]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[x]: Package should compile and build into binary rpms on all supported
     architectures.
[-]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed files.
[x]: Spec use %global instead of %define.

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Spec file according to URL is the same as in SRPM.
[-]: Large data in /usr/share should live in a noarch subpackage if package is
     arched.
     Note: Arch-ed rpms have a total of 5191680 bytes in /usr/share 2242560
     polymake-2.12-3.fc19.x86_64.rpm 2938880 polymake-
     doc-2.12-3.fc19.x86_64.rpm 10240 polymake-devel-2.12-3.fc19.x86_64.rpm


Rpmlint
-------
Checking: polymake-devel-2.12-3.fc19.x86_64.rpm
          polymake-debuginfo-2.12-3.fc19.x86_64.rpm
          polymake-2.12-3.fc19.src.rpm
          polymake-doc-2.12-3.fc19.x86_64.rpm
          polymake-2.12-3.fc19.x86_64.rpm
polymake-devel.x86_64: W: no-documentation
polymake-devel.x86_64: E: rpath-in-buildconfig /usr/bin/polymake-config lines
['150']
polymake-devel.x86_64: W: no-manual-page-for-binary polymake-config
polymake.src: W: spelling-error Summary(en_US) polytopes -> polytheist
polymake.src: W: spelling-error Summary(en_US) polyhedra -> polyhedral,
polyhedron
polymake.src: W: spelling-error %description -l en_US combinatorics ->
combinations
polymake.src: W: spelling-error %description -l en_US polytopes -> polytheist
polymake.src: W: spelling-error %description -l en_US polyhedra -> polyhedral,
polyhedron
polymake.src: W: spelling-error %description -l en_US simplicial -> simplicity,
simplistic
polymake.src: W: spelling-error %description -l en_US matroids -> mastoids
polymake.src: W: spelling-error %description -l en_US azove -> above, Azov
polymake.src: W: spelling-error %description -l en_US gfan -> fan, fang, gran
polymake.src: W: spelling-error %description -l en_US integrale -> integral,
integrals, integrate
polymake.src: W: spelling-error %description -l en_US normaliz -> normalize,
normalization, normal
polymake.src: W: spelling-error %description -l en_US ocaml -> Occam
polymake.src: W: spelling-error %description -l en_US tplib -> split
polymake.src: W: spelling-error %description -l en_US qhull -> hull, q hull,
Hull
polymake.src: W: spelling-error %description -l en_US vinci -> vincible
polymake.src: W: spelling-error %description -l en_US geomview -> geom view,
geom-view, overview
polymake.src: W: spelling-error %description -l en_US graphviz -> graph viz,
graph-viz, graphic
polymake.src: W: spelling-error %description -l en_US gv -> g, v, gov
polymake.src: W: spelling-error %description -l en_US okular -> ocular, ovular
polymake.x86_64: W: spelling-error Summary(en_US) polytopes -> polytheist
polymake.x86_64: W: spelling-error Summary(en_US) polyhedra -> polyhedral,
polyhedron
polymake.x86_64: W: spelling-error %description -l en_US combinatorics ->
combinations
polymake.x86_64: W: spelling-error %description -l en_US polytopes ->
polytheist
polymake.x86_64: W: spelling-error %description -l en_US polyhedra ->
polyhedral, polyhedron
polymake.x86_64: W: spelling-error %description -l en_US simplicial ->
simplicity, simplistic
polymake.x86_64: W: spelling-error %description -l en_US matroids -> mastoids
polymake.x86_64: W: spelling-error %description -l en_US azove -> above, Azov
polymake.x86_64: W: spelling-error %description -l en_US gfan -> fan, fang,
gran
polymake.x86_64: W: spelling-error %description -l en_US integrale -> integral,
integrals, integrate
polymake.x86_64: W: spelling-error %description -l en_US normaliz -> normalize,
normalization, normal
polymake.x86_64: W: spelling-error %description -l en_US ocaml -> Occam
polymake.x86_64: W: spelling-error %description -l en_US tplib -> split
polymake.x86_64: W: spelling-error %description -l en_US qhull -> hull, q hull,
Hull
polymake.x86_64: W: spelling-error %description -l en_US vinci -> vincible
polymake.x86_64: W: spelling-error %description -l en_US geomview -> geom view,
geom-view, overview
polymake.x86_64: W: spelling-error %description -l en_US graphviz -> graph viz,
graph-viz, graphic
polymake.x86_64: W: spelling-error %description -l en_US gv -> g, v, gov
polymake.x86_64: W: spelling-error %description -l en_US okular -> ocular,
ovular
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/core.so
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/matroid.so
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/tropical.so
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/graph.so
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/common.so
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/topaz.so
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/polytope.so
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/group.so
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/fan.so
5 packages and 0 specfiles checked; 1 errors, 49 warnings.




Rpmlint (installed packages)
----------------------------
# rpmlint polymake-doc polymake-debuginfo polymake polymake-devel
l
polymake.x86_64: W: spelling-error Summary(en_US) polytopes -> polytheist
polymake.x86_64: W: spelling-error Summary(en_US) polyhedra -> polyhedral,
polyhedron
polymake.x86_64: W: spelling-error %description -l en_US combinatorics ->
combinations
polymake.x86_64: W: spelling-error %description -l en_US polytopes ->
polytheist
polymake.x86_64: W: spelling-error %description -l en_US polyhedra ->
polyhedral, polyhedron
polymake.x86_64: W: spelling-error %description -l en_US simplicial ->
simplicity, simplistic
polymake.x86_64: W: spelling-error %description -l en_US matroids -> mastoids
polymake.x86_64: W: spelling-error %description -l en_US azove -> above, Azov
polymake.x86_64: W: spelling-error %description -l en_US gfan -> fan, fang,
gran
polymake.x86_64: W: spelling-error %description -l en_US integrale -> integral,
integrals, integrate
polymake.x86_64: W: spelling-error %description -l en_US normaliz -> normalize,
normalization, normal
polymake.x86_64: W: spelling-error %description -l en_US ocaml -> Occam
polymake.x86_64: W: spelling-error %description -l en_US tplib -> split
polymake.x86_64: W: spelling-error %description -l en_US qhull -> hull, q hull,
Hull
polymake.x86_64: W: spelling-error %description -l en_US vinci -> vincible
polymake.x86_64: W: spelling-error %description -l en_US geomview -> geom view,
geom-view, overview
polymake.x86_64: W: spelling-error %description -l en_US graphviz -> graph viz,
graph-viz, graphic
polymake.x86_64: W: spelling-error %description -l en_US gv -> g, v, gov
polymake.x86_64: W: spelling-error %description -l en_US okular -> ocular,
ovular
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/core.so
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/matroid.so
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/tropical.so
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/graph.so
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/common.so
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/topaz.so
polymake.x86_64: W: undefined-non-weak-symbol /usr/lib64/polymake/lib/topaz.so
polymake::graph::BlissGraph::alloc_impl(int, bool)
polymake.x86_64: W: undefined-non-weak-symbol /usr/lib64/polymake/lib/topaz.so
polymake::graph::BlissGraph::operator==(polymake::graph::BlissGraph const&)
const
polymake.x86_64: W: undefined-non-weak-symbol /usr/lib64/polymake/lib/topaz.so
polymake::graph::find_vertex_node(polymake::graph::HasseDiagram const&, int)
polymake.x86_64: W: undefined-non-weak-symbol /usr/lib64/polymake/lib/topaz.so
polymake::graph::HasseDiagram::makeObject() const
polymake.x86_64: W: undefined-non-weak-symbol /usr/lib64/polymake/lib/topaz.so
polymake::graph::BlissGraph::~BlissGraph()
polymake.x86_64: W: undefined-non-weak-symbol /usr/lib64/polymake/lib/topaz.so
polymake::graph::BlissGraph::add_edge(unsigned int, unsigned int)
polymake.x86_64: W: undefined-non-weak-symbol /usr/lib64/polymake/lib/topaz.so
polymake::graph::operator>>(pm::perl::Value const&,
polymake::graph::HasseDiagram&)
polymake.x86_64: W: undefined-non-weak-symbol /usr/lib64/polymake/lib/topaz.so
polymake::graph::BlissGraph::partition(unsigned int)
polymake.x86_64: W: undefined-non-weak-symbol /usr/lib64/polymake/lib/topaz.so
polymake::graph::HasseDiagram::delete_node(int)
polymake.x86_64: W: undefined-non-weak-symbol /usr/lib64/polymake/lib/topaz.so
polymake::graph::BlissGraph::finalize(bool)
polymake.x86_64: W: undefined-non-weak-symbol /usr/lib64/polymake/lib/topaz.so
polymake::graph::BlissGraph::find_permutations(polymake::graph::BlissGraph
const&, int) const
polymake.x86_64: W: undefined-non-weak-symbol /usr/lib64/polymake/lib/topaz.so
polymake::graph::HasseDiagram::fromObject(pm::perl::Object const&)
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/polytope.so
polymake.x86_64: W: undefined-non-weak-symbol
/usr/lib64/polymake/lib/polytope.so
polymake::group::correct_group_from_permlib_group(pm::perl::Object,
polymake::group::PermlibGroup const&)
polymake.x86_64: W: undefined-non-weak-symbol
/usr/lib64/polymake/lib/polytope.so
polymake::group::group_from_perlgroup(pm::perl::Object)
polymake.x86_64: W: undefined-non-weak-symbol
/usr/lib64/polymake/lib/polytope.so
polymake::graph::BlissGraph::find_permutations(polymake::graph::BlissGraph
const&, int) const
polymake.x86_64: W: undefined-non-weak-symbol
/usr/lib64/polymake/lib/polytope.so polymake::graph::BlissGraph::color(unsigned
int, unsigned int)
polymake.x86_64: W: undefined-non-weak-symbol
/usr/lib64/polymake/lib/polytope.so polymake::graph::operator>>(pm::perl::Value
const&, polymake::graph::HasseDiagram&)
polymake.x86_64: W: undefined-non-weak-symbol
/usr/lib64/polymake/lib/polytope.so
polymake::graph::BlissGraph::add_edge(unsigned int, unsigned int)
polymake.x86_64: W: undefined-non-weak-symbol
/usr/lib64/polymake/lib/polytope.so polymake::graph::BlissGraph::finalize(bool)
polymake.x86_64: W: undefined-non-weak-symbol
/usr/lib64/polymake/lib/polytope.so
polymake::graph::BlissGraph::operator==(polymake::graph::BlissGraph const&)
const
polymake.x86_64: W: undefined-non-weak-symbol
/usr/lib64/polymake/lib/polytope.so polymake::graph::HasseDiagram::makeObject()
const
polymake.x86_64: W: undefined-non-weak-symbol
/usr/lib64/polymake/lib/polytope.so
polymake::graph::BlissGraph::alloc_impl(int, bool)
polymake.x86_64: W: undefined-non-weak-symbol
/usr/lib64/polymake/lib/polytope.so
polymake::graph::HasseDiagram::fromObject(pm::perl::Object const&)
polymake.x86_64: W: undefined-non-weak-symbol
/usr/lib64/polymake/lib/polytope.so
polymake::graph::BlissGraph::partition(unsigned int)
polymake.x86_64: W: undefined-non-weak-symbol
/usr/lib64/polymake/lib/polytope.so polymake::graph::BlissGraph::~BlissGraph()
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/group.so
polymake.x86_64: W: no-soname /usr/lib64/polymake/lib/fan.so
polymake.x86_64: W: undefined-non-weak-symbol /usr/lib64/polymake/lib/fan.so
polymake::graph::HasseDiagram::makeObject() const
polymake.x86_64: W: undefined-non-weak-symbol /usr/lib64/polymake/lib/fan.so
polymake::graph::operator>>(pm::perl::Value const&,
polymake::graph::HasseDiagram&)
polymake-devel.x86_64: W: no-documentation
polymake-devel.x86_64: E: rpath-in-buildconfig /usr/bin/polymake-config lines
['150']
polymake-devel.x86_64: W: no-manual-page-for-binary polymake-config
4 packages and 0 specfiles checked; 1 errors, 57 warnings.
# echo 'rpmlint-done:'



Requires
--------
polymake-devel-2.12-3.fc19.x86_64.rpm (rpmlib, GLIBC filtered):

    /usr/bin/perl
    libpolymake.so.2()(64bit)
    perl(strict)
    polymake(x86-64) = 2.12-3.fc19

polymake-debuginfo-2.12-3.fc19.x86_64.rpm (rpmlib, GLIBC filtered):


polymake-doc-2.12-3.fc19.x86_64.rpm (rpmlib, GLIBC filtered):

    polymake(x86-64) = 2.12-3.fc19

polymake-2.12-3.fc19.x86_64.rpm (rpmlib, GLIBC filtered):

    /sbin/ldconfig
    /usr/bin/perl
    libbliss.so.0()(64bit)
    libc.so.6()(64bit)
    libcdd.so.0()(64bit)
    libcddgmp.so.0()(64bit)
    libdl.so.2()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libgmp.so.10()(64bit)
    liblrsgmp.so.4()(64bit)
    libm.so.6()(64bit)
    libmpfr.so.4()(64bit)
    libperl.so()(64bit)
    libpolymake.so.2()(64bit)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.1)(64bit)
    libsympol.so.0.1()(64bit)
    libxml2.so.2()(64bit)
    libxml2.so.2(LIBXML2_2.4.30)(64bit)
    perl >= 1:5.8.1
    perl(:MODULE_COMPAT_5.16.2)
    perl(Carp)
    perl(Config)
    perl(Cwd)
    perl(DynaLoader)
    perl(Encode)
    perl(Errno)
    perl(Fcntl)
    perl(File::Path)
    perl(Getopt::Long)
    perl(IO::Handle)
    perl(IPC::Open3)
    perl(Math::Trig)
    perl(POSIX)
    perl(Socket)
    perl(Symbol)
    perl(Term::ReadLine)
    perl(XML::LibXML)
    perl(XML::SAX::Base)
    perl(XML::Writer)
    perl(integer)
    perl(lib)
    perl(overload)
    perl(re)
    perl(strict)
    perl(subs)
    perl(vars)
    rtld(GNU_HASH)



Provides
--------
polymake-devel-2.12-3.fc19.x86_64.rpm:

    polymake-devel = 2.12-3.fc19
    polymake-devel(x86-64) = 2.12-3.fc19

polymake-debuginfo-2.12-3.fc19.x86_64.rpm:

    polymake-debuginfo = 2.12-3.fc19
    polymake-debuginfo(x86-64) = 2.12-3.fc19

polymake-doc-2.12-3.fc19.x86_64.rpm:

    polymake-doc = 2.12-3.fc19
    polymake-doc(x86-64) = 2.12-3.fc19

polymake-2.12-3.fc19.x86_64.rpm:

    libpolymake.so.2()(64bit)
    polymake = 2.12-3.fc19
    polymake(x86-64) = 2.12-3.fc19



Unversioned so-files
--------------------
polymake-2.12-3.fc19.x86_64.rpm: /usr/lib64/polymake/lib/common.so
polymake-2.12-3.fc19.x86_64.rpm: /usr/lib64/polymake/lib/core.so
polymake-2.12-3.fc19.x86_64.rpm: /usr/lib64/polymake/lib/fan.so
polymake-2.12-3.fc19.x86_64.rpm: /usr/lib64/polymake/lib/graph.so
polymake-2.12-3.fc19.x86_64.rpm: /usr/lib64/polymake/lib/group.so
polymake-2.12-3.fc19.x86_64.rpm: /usr/lib64/polymake/lib/matroid.so
polymake-2.12-3.fc19.x86_64.rpm: /usr/lib64/polymake/lib/polytope.so
polymake-2.12-3.fc19.x86_64.rpm: /usr/lib64/polymake/lib/topaz.so
polymake-2.12-3.fc19.x86_64.rpm: /usr/lib64/polymake/lib/tropical.so
polymake-2.12-3.fc19.x86_64.rpm:
/usr/lib64/polymake/perlx/5.16.2/x86_64-linux-thread-multi/auto/Polymake/Ext/Ext.so

MD5-sum check
-------------
http://polymake.org/lib/exe/fetch.php/download/polymake-2.12-rc3.tar.bz2 :
  CHECKSUM(SHA256) this package     :
354a5220009882c178d8d98ec8c16921eea284ed73ff7d36c5fee787aa3f4796
  CHECKSUM(SHA256) upstream package :
354a5220009882c178d8d98ec8c16921eea284ed73ff7d36c5fee787aa3f4796


Generated by fedora-review 0.3.1 (b71abc1) last change: 2012-10-16
Buildroot used: fedora-rawhide-x86_64
Command line :/usr/bin/fedora-review -v -b 895667 -m fedora-rawhide-x86_64
---%<---

I believe polymake-config should be patch to not add rpath:

$ polymake-config --ldflags
-L/usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-rpath,/usr/lib64

removing the unneeded -L%{_libdir} should also be a good idea
as the rpm is not supposed to install libraries in a non
standard directory.

Otherwise, I belive the package looks good.

Jerry, please run again fedora-review in the sagemath package :-)
As of yesterday all issues were solved and fedora-review was
working on the sagemath srpm.

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