Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=620385 --- Comment #1 from Adam Huffman <bloch@xxxxxxxxxxxx> 2010-08-02 08:15:04 EDT --- rpmlint BED* BEDTools.src:11: W: mixed-use-of-spaces-and-tabs (spaces: line 11, tab: line 1) - this is the comment relating to the Source URL on Google Code BEDTools.src: W: invalid-url Source0: BEDTools.v2.8.3.tar.gz - see above BEDTools.x86_64: E: script-without-shebang /usr/share/BEDTools/genomes/mouse.mm8.genome BEDTools.x86_64: E: script-without-shebang /usr/share/BEDTools/genomes/human.hg19.genome BEDTools.x86_64: E: script-without-shebang /usr/share/BEDTools/genomes/mouse.mm9.genome BEDTools.x86_64: E: script-without-shebang /usr/share/BEDTools/genomes/human.hg18.genome BEDTools.x86_64: E: script-without-shebang /usr/share/BEDTools/data/rmsk.hg18.chr21.bed BEDTools.x86_64: E: script-without-shebang /usr/share/BEDTools/data/knownGene.hg18.chr21.bed - when I tried to fix these, those two directories took on very strange permissions, so I'd welcome guidance here - they're not scripts BEDTools.x86_64: W: no-manual-page-for-binary complementBed BEDTools.x86_64: W: no-manual-page-for-binary genomeCoverageBed BEDTools.x86_64: W: no-manual-page-for-binary mergeBed BEDTools.x86_64: W: no-manual-page-for-binary pairToPair BEDTools.x86_64: W: no-manual-page-for-binary groupBy BEDTools.x86_64: W: no-manual-page-for-binary fastaFromBed BEDTools.x86_64: W: no-manual-page-for-binary slopBed BEDTools.x86_64: W: no-manual-page-for-binary bedToIgv BEDTools.x86_64: W: no-manual-page-for-binary overlap BEDTools.x86_64: W: no-manual-page-for-binary subtractBed BEDTools.x86_64: W: no-manual-page-for-binary bamToBed BEDTools.x86_64: W: no-manual-page-for-binary intersectBed BEDTools.x86_64: W: no-manual-page-for-binary maskFastaFromBed BEDTools.x86_64: W: no-manual-page-for-binary bed12ToBed6 BEDTools.x86_64: W: no-manual-page-for-binary bedToBam BEDTools.x86_64: W: no-manual-page-for-binary sortBed BEDTools.x86_64: W: no-manual-page-for-binary windowBed BEDTools.x86_64: W: no-manual-page-for-binary closestBed BEDTools.x86_64: W: no-manual-page-for-binary linksBed BEDTools.x86_64: W: no-manual-page-for-binary shuffleBed BEDTools.x86_64: W: no-manual-page-for-binary coverageBed BEDTools.x86_64: W: no-manual-page-for-binary pairToBed - there are no man pages - I've included the manual file 3 packages and 0 specfiles checked; 6 errors, 24 warnings. There's also a separate PDF manual at http://bedtools.googlecode.com/files/BEDTools-User-Manual.v3.pdf - I've contacted upstream to clarify its licencing. -- Configure bugmail: https://bugzilla.redhat.com/userprefs.cgi?tab=email ------- You are receiving this mail because: ------- You are on the CC list for the bug. _______________________________________________ package-review mailing list package-review@xxxxxxxxxxxxxxxxxxxxxxx https://admin.fedoraproject.org/mailman/listinfo/package-review