Fedora 40 Update: morphio-3.4.0-6.fc40

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Fedora Update Notification
FEDORA-2024-b7d8d6d927
2024-12-01 03:37:40.166788+00:00
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Name        : morphio
Product     : Fedora 40
Version     : 3.4.0
Release     : 6.fc40
URL         : https://github.com/BlueBrain/MorphIO
Summary     : A python and C++ library for reading and writing neuronal morphologies
Description :
MorphIO is a library for reading and writing neuron morphology files. It
supports the following formats:

- SWC
- ASC (aka. neurolucida)
- H5 v1
- H5 v2 is not supported anymore

It provides 3 C++ classes that are the starting point of every morphology
analysis:

- Soma: contains the information related to the soma.
- Section: a section is the succession of points between two bifurcations. To
  the bare minimum the Section object will contain the section type, the
  position and diameter of each point.
- Morphology: the morphology object contains general information about the
  loaded cell but also provides accessors to the different sections.

One important concept is that MorphIO is split into a read-only part and a
read/write one.

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Update Information:

Fix MorphIO library incorrectly built with test-coverage instrumentation and
correct the License field.
Update morphio from 3.3.9 to 3.4.0:
https://github.com/BlueBrain/MorphIO/releases/tag/v3.4.0
https://github.com/BlueBrain/MorphIO/releases/tag/v3.3.10
Update gsl_lite from 0.41.0 to 0.42.0:
https://github.com/gsl-lite/gsl-lite/releases/tag/v0.42.0
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ChangeLog:

* Thu Nov 21 2024 Benjamin A. Beasley <code@xxxxxxxxxxxxxxxxxx> - 3.4.0-6
- Do not compile the library with coverage-analysis instrumentation
* Thu Nov 21 2024 Benjamin A. Beasley <code@xxxxxxxxxxxxxxxxxx> - 3.4.0-5
- Fix missing debuginfo in the Python extension
* Thu Nov 21 2024 Benjamin A. Beasley <code@xxxxxxxxxxxxxxxxxx> - 3.4.0-4
- Port to pyproject-rpm-macros
* Thu Nov 21 2024 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@xxxxxxxxx> - 3.4.0-2
- fix: add patch, re-test skipped tests (fixes rh#2317982)
* Thu Nov 21 2024 Packit <hello@xxxxxxxxxx> - 3.4.0-1
- Update to 3.4.0 upstream release
- Resolves: rhbz#2317982
* Thu Nov 21 2024 Benjamin A. Beasley <code@xxxxxxxxxxxxxxxxxx> - 3.3.9-12
- Drop â??AND BSD-3-Clauseâ?? from License
- CMake/CodeCoverage.cmake does not contribute to the binary RPMs
* Thu Nov 21 2024 Benjamin A. Beasley <code@xxxxxxxxxxxxxxxxxx> - 3.3.9-7
- Fix a test regression with pybind11 2.11.2, 2.12.1, 2.13.6+
* Fri Oct 25 2024 Orion Poplawski <orion@xxxxxxxx> - 3.3.9-6
- Rebuild for hdf5 1.14.5
* Mon Aug 26 2024 Benjamin A. Beasley <code@xxxxxxxxxxxxxxxxxx> - 3.3.9-5
- Rebuilt with lexertl14-0.1.0^20240506gitbca1359
* Thu Jul 18 2024 Fedora Release Engineering <releng@xxxxxxxxxxxxxxxxx> - 3.3.9-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild
* Sat Jun  8 2024 Python Maint <python-maint@xxxxxxxxxx> - 3.3.9-3
- Rebuilt for Python 3.13
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References:

  [ 1 ] Bug #2317982 - morphio-3.4.0 is available
        https://bugzilla.redhat.com/show_bug.cgi?id=2317982
  [ 2 ] Bug #2323341 - gsl-lite-0.42.0 is available
        https://bugzilla.redhat.com/show_bug.cgi?id=2323341
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This update can be installed with the "dnf" update program. Use
su -c 'dnf upgrade --advisory FEDORA-2024-b7d8d6d927' at the command
line. For more information, refer to the dnf documentation available at
http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label

All packages are signed with the Fedora Project GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
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