-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2024-10f9b5b11c 2024-08-24 01:52:24.934436 -------------------------------------------------------------------------------- Name : snakemake Product : Fedora 40 Version : 8.18.0 Release : 1.fc40 URL : https://snakemake.readthedocs.io/en/stable/index.html Summary : Workflow management system to create reproducible and scalable data analyses Description : The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment. -------------------------------------------------------------------------------- Update Information: snakemake Depend on python-unversioned-command, improving the situation with respect to remote execution. Run tests the way upstream expects, thereby running many more tests. 8.18.0 (2024-08-14) Features show info on missing metadata Performance Improvements cache mtime of scripts and notebooks 8.17.0 (2024-08-13) Features fix job rate limiting with --max-jobs-per-second and introduce the more flexible --max-jobs-per-timespan Bug Fixes Allow hyphens in config keys given on the command line. allowing trailing '+' in name patterns print message if not yet enough resources for executing further jobs unawaited coroutine sanitize_local_storage_copies Documentation Change sha256 checksum in docs to more realistic example Make it more clear that the cluster commands now require a plugin Update installation.rst to recommend Miniforge instead of Mambaforge use plain monospace font instead of theme default that changes >= into â?¥ python-snakemake-interface-common 1.17.3 (2024-08-14) Bug Fixes set CLI arg type to str if parse_func is provided Documentation insert space between original help message and suffix python-snakemake-interface-storage-plugins 3.2.4 (2024-08-14) Bug Fixes in test suite, check that filepath exists after retrieval python-snakemake-storage-plugin-s3 0.2.12 (2024-08-14) Bug Fixes allow boto3 to automatically refresh credentials fix retrieval of nested directories -------------------------------------------------------------------------------- ChangeLog: * Thu Aug 15 2024 Packit <hello@xxxxxxxxxx> - 8.18.0-1 - Update to 8.18.0 upstream release - Resolves: rhbz#2305095 * Tue Aug 13 2024 Packit <hello@xxxxxxxxxx> - 8.17.0-1 - Update to 8.17.0 upstream release - Resolves: rhbz#2304309 * Sun Aug 4 2024 Benjamin A. Beasley <code@xxxxxxxxxxxxxxxxxx> - 8.16.0-4 - Run tests the way upstream expects - The result is that we run many more tests * Thu Aug 1 2024 Benjamin A. Beasley <code@xxxxxxxxxxxxxxxxxx> - 8.16.0-3 - Rely on python-unversioned-command - This seems to be the best compromise around portable remote execution * Sat Jul 20 2024 Fedora Release Engineering <releng@xxxxxxxxxxxxxxxxx> - 8.16.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild -------------------------------------------------------------------------------- References: [ 1 ] Bug #2304309 - snakemake-8.17.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=2304309 [ 2 ] Bug #2305095 - snakemake-8.18.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=2305095 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2024-10f9b5b11c' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------
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