-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2024-7a367f4a2e 2024-07-25 01:27:23.772075 -------------------------------------------------------------------------------- Name : snakemake Product : Fedora 40 Version : 8.16.0 Release : 1.fc40 URL : https://snakemake.readthedocs.io/en/stable/index.html Summary : Workflow management system to create reproducible and scalable data analyses Description : The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment. -------------------------------------------------------------------------------- Update Information: snakemake 8.16.0 (2024-07-09) Features added snakemake.script.snakemake for type hinting Documentation use note directive to align with the capabilities of the used theme snakemake 8.15.2 (2024-07-05) Bug Fixes ensure that envvars in local storage prefix are not prematurely expanded by the shell fix circular import snakemake 8.15.1 (2024-07-04) Bug Fixes implement support for --touch on remote storage (if the storage provider supports it) snakemake 8.15.0 (2024-07-04) Features add can_transfer_local_files to executor plugin interface Bug Fixes duplicate wildcards handling of missing attributes in input/output/params lists that have been guarded against misuse (sort, index) improve error message in case of invalid default storage prefix include more context to syntax errors when rule parsing fails parse f-string as-is from source sanitize old local storage copies before evaluating params or resource functions suppress printing of non-constant or uninteresting defaults in --help Documentation fix code block formatting fix signature display python-snakemake-storage-plugin-fs 1.0.5 (2024-07-04) Bug Fixes fix touch and retrieval of mtime for directories python-snakemake-interface-storage-plugins 3.2.3 (2024-07-04) Bug Fixes fix name of touch operation attribute return type of local_suffix python-snakemake-interface-executor-plugins 9.2.0 (2024-07-04) Features add a default for the can_transfer_local_files interface support for commas in wildcards python-snakemake-executor-plugin-slurm 0.8.0 (2024-07-12) Features Allow controlling more settings from the CLI, https://github.com/snakemake/snakemake-executor-plugin-slurm/issues/73 python-snakemake-executor-plugin-slurm 0.7.0 (2024-06-25) Features warning if run in job Bug Fixes null byte account guess Documentation added mini paragraph about Conda and Env Modules added paragraphs about dynamic resource allocation storage update -------------------------------------------------------------------------------- ChangeLog: * Thu Jul 11 2024 Packit <hello@xxxxxxxxxx> - 8.16.0-1 - Update to 8.16.0 upstream release - Resolves: rhbz#2297081 * Fri Jul 5 2024 Packit <hello@xxxxxxxxxx> - 8.15.2-1 - Update to 8.15.2 upstream release - Resolves: rhbz#2295978 -------------------------------------------------------------------------------- References: [ 1 ] Bug #2295729 - python-snakemake-executor-plugin-slurm-0.7.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=2295729 [ 2 ] Bug #2295974 - python-snakemake-interface-executor-plugins-9.2.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=2295974 [ 3 ] Bug #2295975 - python-snakemake-interface-storage-plugins-3.2.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=2295975 [ 4 ] Bug #2295976 - python-snakemake-storage-plugin-fs-1.0.5 is available https://bugzilla.redhat.com/show_bug.cgi?id=2295976 [ 5 ] Bug #2295978 - snakemake-8.15.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=2295978 [ 6 ] Bug #2297081 - snakemake-8.16.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=2297081 [ 7 ] Bug #2298062 - python-snakemake-executor-plugin-slurm-0.8.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=2298062 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2024-7a367f4a2e' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys -------------------------------------------------------------------------------- -- _______________________________________________ package-announce mailing list -- package-announce@xxxxxxxxxxxxxxxxxxxxxxx To unsubscribe send an email to package-announce-leave@xxxxxxxxxxxxxxxxxxxxxxx Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-announce@xxxxxxxxxxxxxxxxxxxxxxx Do not reply to spam, report it: https://pagure.io/fedora-infrastructure/new_issue