-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2024-5fbd154599 2024-06-28 01:57:22.925648 -------------------------------------------------------------------------------- Name : python-bioframe Product : Fedora 40 Version : 0.7.1 Release : 5.fc40 URL : https://github.com/open2c/bioframe Summary : Operations and utilities for Genomic Interval Dataframes Description : Bioframe enables flexible and scalable operations on genomic interval dataframes in Python. Bioframe is built directly on top of Pandas. Bioframe provides: - A variety of genomic interval operations that work directly on dataframes. - Operations for special classes of genomic intervals, including chromosome arms and fixed-size bins. - Conveniences for diverse tabular genomic data formats and loading genome assembly summary information. Bioframe is an Affiliated Project of NumFOCUS. -------------------------------------------------------------------------------- Update Information: Update python-bioframe to 0.7.1 v0.7.1 Date 2024-06-17 Maintenance: * Refactor join arrayops and intidx internals by @nvictus in https://github.com/open2c/bioframe/pull/204 * NumPy 2.0 was released. Pin numpy < 2 until we migrate. Full Changelog: https://github.com/open2c/bioframe/compare/v0.7.0...v0.7.1 v0.7.0 Date 2024-05-20 API changes: * Add to_bed function to validate and write standard BED files @gamazeps in https://github.com/open2c/bioframe/pull/203 * read_bam deprecated in favor of read_alignments @gamazeps in https://github.com/open2c/bioframe/pull/206 Documentation: * Add "bioframe for bedtools users" guide to docs by @gamazeps in https://github.com/open2c/bioframe/pull/198 Bug fixes: * Fix contig name and JSON issues in read_bam implementation by @gamazeps in https://github.com/open2c/bioframe/pull/206 Full Changelog: https://github.com/open2c/bioframe/compare/v0.6.4...v0.7.0 -------------------------------------------------------------------------------- ChangeLog: * Tue Jun 18 2024 Packit <hello@xxxxxxxxxx> - 0.7.1-1 - Update to 0.7.1 upstream release - Resolves: rhbz#2282277 * Sat Jun 8 2024 Python Maint <python-maint@xxxxxxxxxx> - 0.6.4-2 - Rebuilt for Python 3.13 -------------------------------------------------------------------------------- References: [ 1 ] Bug #2282277 - python-bioframe-0.7.1 is available https://bugzilla.redhat.com/show_bug.cgi?id=2282277 [ 2 ] Bug #2282778 - Review Request: python-pybbi - Python bindings to the UCSC source for Big Binary Indexed (bigWig/bigBed) files https://bugzilla.redhat.com/show_bug.cgi?id=2282778 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2024-5fbd154599' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys -------------------------------------------------------------------------------- -- _______________________________________________ package-announce mailing list -- package-announce@xxxxxxxxxxxxxxxxxxxxxxx To unsubscribe send an email to package-announce-leave@xxxxxxxxxxxxxxxxxxxxxxx Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-announce@xxxxxxxxxxxxxxxxxxxxxxx Do not reply to spam, report it: https://pagure.io/fedora-infrastructure/new_issue
