-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2024-426625788f 2024-05-14 01:25:35.001077 -------------------------------------------------------------------------------- Name : snakemake Product : Fedora 40 Version : 8.11.3 Release : 1.fc40 URL : https://snakemake.readthedocs.io/en/stable/index.html Summary : Workflow management system to create reproducible and scalable data analyses Description : The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment. -------------------------------------------------------------------------------- Update Information: snakemake 8.11.3 (2024-05-03) Bug Fixes ignore errors when cleaning up runtime cache show queries of remote storage files instead of local paths in summary 8.11.2 (2024-05-02) Bug Fixes bug when requesting extended benchmark with slurm 8.11.1 (2024-04-29) Bug Fixes check template rendering output for leaked input file paths do not distinguish between local and remote rules in dryrun omit norun jobs when determining remote storage input file retrieval Prevent binary log files to crash snakemake execution with show-failed-logs replace pkg_resources for python 3.12 return set instead of list when just --quiet small typo in error use keyword arguments in _IOFile.open Documentation fix typo and link for RO Crate 8.11.0 (2024-04-25) Features allow for more extensive benchmark file in jsonl format Bug Fixes only download input for local jobs in the main process, not within remote groups remove non-empty local copies of remote storage dirs retrieve files from storage if necessary when calling their open method (e.g. when accessing output files from a checkpoint) 8.10.8 (2024-04-19) Bug Fixes extend workflow test suite by wildcards with slashes (in order to detect bugs that can occur in executors) invalid extensions with multixt and cache module prefix added twice on expand retrieve inputs of local rules from storage even if they are intermediate results Documentation add snakemake and reportplugins to req.txt to show all cli options python-snakemake-storage-plugin-fs 1.0.4 (2024-04-25) Bug Fixes inherit ownership and permissions from "remote"/destination dir python-snakemake-storage-plugin-gcs 1.0.0 (2024-04-26) Bug Fixes expect correct google cloud storage abbreviation in query scheme (gcs://) fix directory support Documentation add intro, fix link -------------------------------------------------------------------------------- ChangeLog: * Sat May 4 2024 Packit <hello@xxxxxxxxxx> - 8.11.3-1 - Update to 8.11.3 upstream release - Resolves: rhbz#2278739 * Wed May 1 2024 Packit <hello@xxxxxxxxxx> - 8.11.1-1 - Update to 8.11.1 upstream release - Resolves: rhbz#2278140 * Thu Apr 25 2024 Packit <hello@xxxxxxxxxx> - 8.11.0-1 - Update to 8.11.0 upstream release - Resolves: rhbz#2276195 * Sat Apr 20 2024 Packit <hello@xxxxxxxxxx> - 8.10.8-1 - Update to 8.10.8 upstream release - Resolves: rhbz#2276195 -------------------------------------------------------------------------------- References: [ 1 ] Bug #2276195 - snakemake-8.11.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=2276195 [ 2 ] Bug #2277127 - python-snakemake-storage-plugin-fs-1.0.4 is available https://bugzilla.redhat.com/show_bug.cgi?id=2277127 [ 3 ] Bug #2277388 - python-snakemake-storage-plugin-gcs-1.0.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=2277388 [ 4 ] Bug #2278140 - snakemake-8.11.1 is available https://bugzilla.redhat.com/show_bug.cgi?id=2278140 [ 5 ] Bug #2278739 - snakemake-8.11.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=2278739 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2024-426625788f' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys -------------------------------------------------------------------------------- -- _______________________________________________ package-announce mailing list -- package-announce@xxxxxxxxxxxxxxxxxxxxxxx To unsubscribe send an email to package-announce-leave@xxxxxxxxxxxxxxxxxxxxxxx Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-announce@xxxxxxxxxxxxxxxxxxxxxxx Do not reply to spam, report it: https://pagure.io/fedora-infrastructure/new_issue
