-------------------------------------------------------------------------------- Fedora Update Notification FEDORA-2024-62ba68cc43 2024-04-28 03:15:21.869661 -------------------------------------------------------------------------------- Name : python-snakemake-executor-plugin-slurm Product : Fedora 40 Version : 0.4.5 Release : 1.fc40 URL : https://github.com/snakemake/snakemake-executor-plugin-slurm Summary : A Snakemake executor plugin for submitting jobs to a SLURM cluster Description : A Snakemake executor plugin for submitting jobs to a SLURM cluster. -------------------------------------------------------------------------------- Update Information: snakemake 8.10.7 (2024-04-12) Bug Fixes expand error on modules with prefix failure message in cleanup_metadata handle async method in cleanup_storage_objects 8.10.6 (2024-04-04) Bug Fixes only constrain by --max-threads if threads of job are already known 8.10.5 (2024-04-04) Bug Fixes properly delete local copies of storage files after remote jobs respect APPTAINER_CACHEDIR and allow env variables in --apptainer-prefix and --conda-prefix 8.10.4 (2024-03-27) Documentation fix links 8.10.3 (2024-03-27) Documentation mention maintainers 8.10.2 (2024-03-26) Bug Fixes remove default packages from conda envs use base64 encoding for passing default resources args to jobs 8.10.1 (2024-03-26) Bug Fixes passing of --set-threads values to remote jobs use base64 encoding when passing resources and threads to remote jobs (this solves issues with complex quoted resources) 8.10.0 (2024-03-22) Features expose ResourceSettings in TestWorkflowsBase python-snakemake-interface-common 1.17.2 (2024-04-11) Bug Fixes Add missing name field to InvalidPluginExceptions properly handle missing defaults in plugin settings python-snakemake-interface-executor-plugins 9.1.1 (2024-04-12) Bug Fixes pass cores to remote jobs if they are set 9.1.0 (2024-03-26) Features add utils for encoding CLI args as base64 9.0.2 (2024-03-22) Bug Fixes quote list of args 9.0.1 (2024-03-21) Bug Fixes fix quoting of string arguments that are passed to spawned jobs python-snakemake-interface-storage-plugins 3.2.2 (2024-04-17) Bug Fixes improved storage tests 3.2.1 (2024-04-16) Bug Fixes rm local dir before storage test 3.2.0 (2024-04-15) Features add test case for directories python-snakemake-executor-plugin-slurm-jobspec 0.2.1 (2024-04-11) Bug Fixes cgroup confinement 0.2.0 (2024-04-06) Features improved debug messages python-snakemake-executor-plugin-slurm 0.4.5 (2024-04-17) Bug Fixes fix path typo 0.4.4 (2024-04-15) Miscellaneous Chores release 0.4.4 0.4.3 (2024-04-12) Bug Fixes always create logdir before sbatch python-snakemake-storage-plugin-fs 1.0.3 (2024-04-17) Bug Fixes fix query validation (used deprecated API) 1.0.2 (2024-04-16) Miscellaneous Chores release 1.0.2 1.0.1 (2024-04-16) Bug Fixes do not consider URL-like queries as valid python-snakemake-storage-plugin-s3 0.2.11 (2024-04-17) Bug Fixes update to at least 3.2.2 of storage interface fix errors when retrieving directories -------------------------------------------------------------------------------- ChangeLog: * Thu Apr 18 2024 Packit <hello@xxxxxxxxxx> - 0.4.5-1 - Update to 0.4.5 upstream release - Resolves: rhbz#2275831 * Mon Apr 15 2024 Packit <hello@xxxxxxxxxx> - 0.4.4-1 - Update to 0.4.4 upstream release - Resolves: rhbz#2275105 * Sat Apr 13 2024 Packit <hello@xxxxxxxxxx> - 0.4.3-1 - Update to 0.4.3 upstream release - Resolves: rhbz#2274845 -------------------------------------------------------------------------------- References: [ 1 ] Bug #2271076 - snakemake-8.10.4 is available https://bugzilla.redhat.com/show_bug.cgi?id=2271076 [ 2 ] Bug #2271077 - python-snakemake-interface-executor-plugins-9.1.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=2271077 [ 3 ] Bug #2273536 - snakemake-8.10.6 is available https://bugzilla.redhat.com/show_bug.cgi?id=2273536 [ 4 ] Bug #2274659 - python-snakemake-interface-common-1.17.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=2274659 [ 5 ] Bug #2274660 - python-snakemake-executor-plugin-slurm-jobstep-0.2.1 is available https://bugzilla.redhat.com/show_bug.cgi?id=2274660 [ 6 ] Bug #2274843 - snakemake-8.10.7 is available https://bugzilla.redhat.com/show_bug.cgi?id=2274843 [ 7 ] Bug #2274844 - python-snakemake-interface-executor-plugins-9.1.1 is available https://bugzilla.redhat.com/show_bug.cgi?id=2274844 [ 8 ] Bug #2274845 - python-snakemake-executor-plugin-slurm-0.4.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=2274845 [ 9 ] Bug #2275104 - python-snakemake-interface-storage-plugins-3.2.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=2275104 [ 10 ] Bug #2275105 - python-snakemake-executor-plugin-slurm-0.4.4 is available https://bugzilla.redhat.com/show_bug.cgi?id=2275105 [ 11 ] Bug #2275331 - python-snakemake-storage-plugin-fs-1.0.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=2275331 [ 12 ] Bug #2275332 - python-snakemake-interface-storage-plugins-3.2.1 is available https://bugzilla.redhat.com/show_bug.cgi?id=2275332 [ 13 ] Bug #2275830 - python-snakemake-interface-storage-plugins-3.2.2 is available https://bugzilla.redhat.com/show_bug.cgi?id=2275830 [ 14 ] Bug #2275831 - python-snakemake-executor-plugin-slurm-0.4.5 is available https://bugzilla.redhat.com/show_bug.cgi?id=2275831 [ 15 ] Bug #2275832 - python-snakemake-storage-plugin-fs-1.0.3 is available https://bugzilla.redhat.com/show_bug.cgi?id=2275832 [ 16 ] Bug #2275833 - python-snakemake-storage-plugin-s3-0.2.11 is available https://bugzilla.redhat.com/show_bug.cgi?id=2275833 -------------------------------------------------------------------------------- This update can be installed with the "dnf" update program. Use su -c 'dnf upgrade --advisory FEDORA-2024-62ba68cc43' at the command line. For more information, refer to the dnf documentation available at http://dnf.readthedocs.io/en/latest/command_ref.html#upgrade-command-label All packages are signed with the Fedora Project GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys -------------------------------------------------------------------------------- -- _______________________________________________ package-announce mailing list -- package-announce@xxxxxxxxxxxxxxxxxxxxxxx To unsubscribe send an email to package-announce-leave@xxxxxxxxxxxxxxxxxxxxxxx Fedora Code of Conduct: https://docs.fedoraproject.org/en-US/project/code-of-conduct/ List Guidelines: https://fedoraproject.org/wiki/Mailing_list_guidelines List Archives: https://lists.fedoraproject.org/archives/list/package-announce@xxxxxxxxxxxxxxxxxxxxxxx Do not reply to spam, report it: https://pagure.io/fedora-infrastructure/new_issue
