Your Buildrequires are your declaration of what is required for the build
the spec wants to do. You don't want it to depend on what happens to be
around.
I think what you want to do is:
%define gnupg_version 1.2
%if "%fedora" >= "6"
%define gnupg_version 1.4
%endif
%if "%rhel" >= "5"
%define gnupg_version 1.4
%endif
...
BuildRequires: gnupg = %{gnupg_version}
...
%check
%if "%gnupg_version" = "1.2"
this data
%else
that data
%endif
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