Re: Is it possible atlas is linked wrongly by new binutils?

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On Wed, Aug 09, 2017 at 02:10:02PM +0200, Antonio Trande wrote:
> On 08/09/2017 11:37 AM, Richard W.M. Jones wrote:
> > 
> > ocaml-gsl (OCaml bindings for GNU Scientific Library) currently
> > fails to link to atlas:
> > 
> > + /usr/bin/ocamlfind ocamlopt -g -I lib -linkpkg -package bigarray -I lib -I examples lib/gsl.cmxa examples/blas_ex.cmx -o examples/blas_ex.native
> > /usr/lib64/atlas/libsatlas.so: undefined reference to `dlarfy_'
> > /usr/lib64/atlas/libsatlas.so: undefined reference to `slarfy_'
> > /usr/lib64/atlas/libsatlas.so: undefined reference to `clarfy_'
> > /usr/lib64/atlas/libsatlas.so: undefined reference to `zlarfy_'
> > collect2: error: ld returned 1 exit status
> > 
> > However this only happens with the very latest atlas that was built by
> > binutils 2.29 (atlas-3.10.2-18.fc27.x86_64).  It doesn't occur with
> > the previous version of atlas (atlas-3.10.2-16.fc26) even though there
> > seems to have been no change in atlas.
> > 
> > $ nm -D /usr/lib64/atlas/libtatlas.so | grep larfy
> >                  U clarfy_
> >                  U dlarfy_
> >                  U slarfy_
> >                  U zlarfy_
> > 
> > I looked in /usr/lib64 on my development machine which has atlas
> > installed but there is no .so* file that I can find which defines
> > these symbols.  I also couldn't work out where in the atlas code
> > (which is a bit strange) these references are used.
> > 
> > Hence the question: Is this breakage in atlas?  binutils?
> > 
> > Rich.
> > 
> 
> lapack-3.7.1 on rawhide looks affected too:
> https://bugzilla.redhat.com/show_bug.cgi?id=1479567

As is ocaml-lacaml (OCaml bindings for lapack) ...

Rich.

-- 
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