On Tue, Sep 8, 2015 at 10:04 AM, arnaud gaboury
<arnaud.gaboury@xxxxxxxxx> wrote:
> First try at building a rpm package and as feared, errors are returned.
>
> Fedora 22
>
> I wrote my own .spec file based on this package[0]. My goal is to
> build R using Intel Compiler and MKL. The whole part of the spec file
> is untouched, except for the configure, variables and flag part.
>
> At the begining of %build section, I have added this:
>
> -------------------
> %build
> .......
> source /opt/intel/compilers_and_libraries_2016/linux/mkl/bin/mklvars.sh intel64
> source /opt/intel/bin/compilervars.sh intel64
> _mkllibpath=${MKLROOT}/lib/intel64
> _openmplibpath=${PROD_DIR}/compiler/lib/intel64
> export LD_LIBRARY_PATH=${_mkllibpath}:${_openmplibpath}
> export MKL="-L${_mkllibpath} -L${_openmplibpath} -lmkl_intel_ilp64
> -lmkl_core -lmkl_intel_thread -liomp5 -lpthread -lm"
> ------------------------------------------------
>
> $ cat CONFIGURE.log | grep -A30 'R is now'
> -----------------------------------------------
> 757- Source directory: .
> 758- Installation directory: /usr
> 759-
> 760- C compiler: icc -std=c99 -ip -O3
> -opt-mem-layout-trans=3 -xHost -mavx -fp-model precise -wd188
> -DMKL_ILP64 -qopenmp -parallel
> -I/opt/intel/compilers_and_libraries_2016.0.109/linux/mkl/include
> 761- Fortran 77 compiler: ifort -ip -O3
> -opt-mem-layout-trans=3 -xHost -mavx -fp-model precise -DMKL_ILP64
> -qopenmp -parallel
> -I/opt/intel/compilers_and_libraries_2016.0.109/linux/mkl/include
> 762-
> 763- C++ compiler: icpc -ip -O3 -opt-mem-layout-trans=3
> -xHost -mavx -fp-model precise -DMKL_ILP64 -qopenmp-parallel
> -I/opt/intel/compilers_and_libraries_2016.0.109/linux/mkl/include
> 764- C++ 11 compiler: icpc -std=c++11 -ip -O3
> -opt-mem-layout-trans=3 -xHost -mavx -fp-model precise -DMKL_ILP64
> -qopenmp-parallel
> -I/opt/intel/compilers_and_libraries_2016.0.109/linux/mkl/include
> 765- Fortran 90/95 compiler: ifort -ip -O3 -opt-mem-layout-trans=3
> -xHost -mavx -fp-model precise -DMKL_ILP64 -qopenmp -parallel
> -I/opt/intel/compilers_and_libraries_2016.0.109/linux/mkl/include
> 766- Obj-C compiler: gcc -g -O2 -fobjc-exceptions
> 767-
> 768- Interfaces supported: tcltk
> 769- External libraries: readline, zlib, bzlib, lzma, PCRE, tre, curl
> 770- Additional capabilities: PNG, JPEG, TIFF, NLS, ICU
> 771- Options enabled: shared R library, shared BLAS, R
> profiling, memory profiling, static HTML
> ----------------------------------------------
>
> The first two lines source scripts to populate environment variables.
> 1- I am surprised not to see these variables when running $ env from
> my build shell. Any reason?
> 2- the build fails (cannot find ICC) IF I do not source these two
> scripts before I run $ rpmbuild. When these variables are set, make
> succeed.
>
> I guess these two lines (source
> /opt/intel/compilers_and_libraries_2016/linux/mkl/bin/mklvars.sh
> intel64
> source /opt/intel/bin/compilervars.sh intel64 are not read by
> rpmbuild. Maybe the shell command source is wrong ?
> Hint: shell is zsh (normally I can build everything)
>
> Thank you for hints
>
> --
>
> google.com/+arnaudgabourygabx
Forgot link to package:
[0]https://apps.fedoraproject.org/packages/R
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