Re: Reef (18.2): Some PG not scrubbed/deep scrubbed for 1 month

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Hi,

As I said in my initial message, I'd in mind to do exactly the same as I identified in my initial analysis that all the PGs with this problem where sharing one OSD (but only 20 PGs had the problem over ~200 hosted by the OSD). But as I don't feel I'm in an urgent situation, I was wondering if collecting more information on the problem may have some value and which one... If it helps, I add below the `pg dump` for the 17 PGs still with a "stucked scrub".

I observed the "stucked scrubs" is lowering very slowly. In the last 12 hours, 1 more PG was successfully scrubbed/deep scrubbed. In case it was not clear in my initial message, the lists of PGs with a too old scrub and too old deep scrub are the same.

Without an answer, next week i may consider doing what you did: remove the suspect OSD (instead of just restarting it) and see it unblocks the stucked scrubs.

Best regards,

Michel

--------------------------------- "ceph pg dump pgs" for the 17 PGs with a too old scrub and deep scrub (same list) ------------------------------------------------------------

PG_STAT  OBJECTS  MISSING_ON_PRIMARY  DEGRADED  MISPLACED UNFOUND  BYTES        OMAP_BYTES*  OMAP_KEYS*  LOG    LOG_DUPS DISK_LOG  STATE STATE_STAMP                      VERSION       REPORTED UP                 UP_PRIMARY  ACTING             ACTING_PRIMARY LAST_SCRUB    SCRUB_STAMP                      LAST_DEEP_SCRUB DEEP_SCRUB_STAMP                 SNAPTRIMQ_LEN LAST_SCRUB_DURATION SCRUB_SCHEDULING OBJECTS_SCRUBBED  OBJECTS_TRIMMED 29.7e3       260                   0         0          0 0   1090519040            0           0   1978       500 1978                 active+clean 2024-03-21T18:28:53.369789+0000    39202'2478    83812:97136 [29,141,64,194]          29    [29,141,64,194]              29 39202'2478  2024-02-17T19:56:34.413412+0000       39202'2478 2024-02-17T19:56:34.413412+0000              0 3  queued for deep scrub 0                0 25.7cc         0                   0         0          0 0            0            0           0      0      1076 0                 active+clean 2024-03-21T18:09:48.104279+0000     46253'548 83812:89843        [29,50,173]          29 [29,50,173]              29     39159'536 2024-02-17T18:14:54.950401+0000        39159'536 2024-02-17T18:14:54.950401+0000              0 1  queued for deep scrub 0                0 25.70c         0                   0         0          0 0            0            0           0      0       918 0                 active+clean 2024-03-21T18:00:57.942902+0000     46253'514    83812:95212 [29,195,185]          29       [29,195,185]              29 39159'530  2024-02-18T03:56:17.559531+0000        39159'530 2024-02-16T17:39:03.281785+0000              0 1  queued for deep scrub 0                0 29.70c       249                   0         0          0 0   1044381696            0           0   1987       600 1987                 active+clean 2024-03-21T18:35:36.848189+0000    39202'2587    83812:99628 [29,138,63,12]          29     [29,138,63,12]              29 39202'2587  2024-02-17T21:34:22.042560+0000       39202'2587 2024-02-17T21:34:22.042560+0000              0 1  queued for deep scrub 0                0 29.705       231                   0         0          0 0    968884224            0           0   1959       500 1959                 active+clean 2024-03-21T18:18:22.028551+0000    39202'2459    83812:91258 [29,147,173,61]          29    [29,147,173,61]              29 39202'2459  2024-02-17T16:41:40.421763+0000       39202'2459 2024-02-17T16:41:40.421763+0000              0 1  queued for deep scrub 0                0 29.6b9       236                   0         0          0 0    989855744            0           0   1956       500 1956                 active+clean 2024-03-21T18:11:29.912132+0000    39202'2456    83812:95607 [29,199,74,16]          29     [29,199,74,16]              29 39202'2456  2024-02-17T11:46:06.706625+0000       39202'2456 2024-02-17T11:46:06.706625+0000              0 1  queued for deep scrub 0                0 25.56e         0                   0         0          0 0            0            0           0      0      1158 0  active+clean+scrubbing+deep 2024-03-22T08:09:38.840145+0000     46253'514   83812:637482 [111,29,128]         111       [111,29,128]             111 39159'579  2024-03-06T17:57:53.158936+0000        39159'579 2024-03-06T17:57:53.158936+0000              0 1  queued for deep scrub 0                0 25.56a         0                   0         0          0 0            0            0           0      0      1055 0                 active+clean 2024-03-21T18:00:57.940851+0000     46253'545 83812:93475        [29,19,211]          29 [29,19,211]              29     46253'545 2024-03-07T11:12:45.881545+0000        46253'545 2024-03-07T11:12:45.881545+0000              0 28  queued for deep scrub 0                0 25.55a         0                   0         0          0 0            0            0           0      0      1022 0                 active+clean 2024-03-21T18:10:24.124914+0000     46253'565 83812:89876        [29,58,195]          29 [29,58,195]              29     46253'561 2024-02-17T06:54:35.320454+0000        46253'561 2024-02-17T06:54:35.320454+0000              0 28  queued for deep scrub 0                0 29.c0        256                   0         0          0 0   1073741824            0           0   1986       600 1986  active+clean+scrubbing+deep 2024-03-22T08:09:12.849868+0000    39202'2586   83812:603625 [22,150,29,56]          22     [22,150,29,56]              22 39202'2586  2024-03-07T18:53:22.952868+0000       39202'2586 2024-03-07T18:53:22.952868+0000              0 1  queued for deep scrub 0                0 18.6       15501                   0         0          0 0  63959444676            0           0   2068      3000 2068  active+clean+scrubbing+deep 2024-03-22T02:29:24.508889+0000  81688'663900  83812:1272160 [187,29,211]         187       [187,29,211]             187 52735'663878  2024-03-06T16:36:32.080259+0000     52735'663878 2024-03-06T16:36:32.080259+0000              0 684445  deep scrubbing for 20373s 449                0 16.15          0                   0         0          0 0            0            0           0      0         0 0                 active+clean 2024-03-21T18:20:29.632554+0000           0'0 83812:104893        [29,165,85]          29 [29,165,85]              29           0'0 2024-02-17T06:54:06.370647+0000              0'0 2024-02-17T06:54:06.370647+0000              0 28  queued for deep scrub 0                0 25.45          0                   0         0          0 0            0            0           0      0      1036 0                 active+clean 2024-03-21T18:10:24.125134+0000     39159'561 83812:93649         [29,13,58]          29 [29,13,58]              29     39159'512 2024-02-27T12:27:35.728176+0000        39159'512 2024-02-27T12:27:35.728176+0000              0 1  queued for deep scrub 0                0 29.249       260                   0         0          0 0   1090519040            0           0   1970       500 1970                 active+clean 2024-03-21T18:29:22.588805+0000    39202'2470    83812:96016 [29,191,18,143]          29    [29,191,18,143]              29 39202'2470  2024-02-17T13:32:42.910335+0000       39202'2470 2024-02-17T13:32:42.910335+0000              0 1  queued for deep scrub 0                0 29.25a       248                   0         0          0 0   1040187392            0           0   1952       600 1952                 active+clean 2024-03-21T18:20:29.623422+0000    39202'2552    83812:99157 [29,200,85,164]          29    [29,200,85,164]              29 39202'2552  2024-02-17T08:33:14.326087+0000       39202'2552 2024-02-17T08:33:14.326087+0000              0 1  queued for deep scrub 0                0 25.3cf         0                   0         0          0 0            0            0           0      0      1343 0                 active+clean 2024-03-21T18:16:00.933375+0000     46253'598 83812:91659        [29,75,175]          29 [29,75,175]              29     46253'598 2024-02-17T11:48:51.840600+0000        46253'598 2024-02-17T11:48:51.840600+0000              0 28  queued for deep scrub 0                0 29.4ec       243                   0         0          0 0   1019215872            0           0   1933       500 1933                 active+clean 2024-03-21T18:15:35.389598+0000    39202'2433   83812:101501 [29,206,63,17]          29     [29,206,63,17]              29 39202'2433  2024-02-17T15:10:41.027755+0000       39202'2433 2024-02-17T15:10:41.027755+0000              0 3  queued for deep scrub 0                0


Le 22/03/2024 à 08:16, Bandelow, Gunnar a écrit :
Hi Michael,

i think yesterday i found the culprit in my case.

After inspecting "ceph pg dump" and especially the column "last_scrub_duration". I found, that any PG without proper scrubbing was located on one of three OSDs (and all these OSDs share the same SSD for their DB). I put them on "out" and now after backfill and remapping everything seems to be fine.

Only the log is still flooded with "scrub starts" and i have no clue why these OSDs are causing the problems.
Will investigate further.

Best regards,
Gunnar

===================================

 Gunnar Bandelow
 Universitätsrechenzentrum (URZ)
 Universität Greifswald
 Felix-Hausdorff-Straße 18
 17489 Greifswald
 Germany

 Tel.: +49 3834 420 1450


--- Original Nachricht ---
*Betreff: * Re: Reef (18.2): Some PG not scrubbed/deep scrubbed for 1 month *Von: *"Michel Jouvin" <michel.jouvin@xxxxxxxxxxxxxxx <mailto:michel.jouvin@xxxxxxxxxxxxxxx>>
*An: *ceph-users@xxxxxxx <mailto:ceph-users@xxxxxxx>
*Datum: *21-03-2024 23:40



    Hi,

    Today we decided to upgrade from 18.2.0 to 18.2.2. No real hope of a
    direct impact (nothing in the change log related to something
    similar)
    but at least all daemons were restarted so we thought that may be
    this
    will clear the problem at least temporarily. Unfortunately it has not
    been the case. The same pages are still stuck, despite continuous
    activity of scrubbing/deep scrubbing in the cluster...

    I'm happy to provide more information if somebody tells me what to
    look
    at...

    Cheers,

    Michel

    Le 21/03/2024 à 14:40, Bernhard Krieger a écrit :
    > Hi,
    >
    > i have the same issues.
    > Deep scrub havent finished the jobs on some PGs.
    >
    > Using ceph 18.2.2.
    > Initial installed version was 18.0.0
    >
    >
    > In the logs i see a lot of scrub/deep-scrub starts
    >
    > Mar 21 14:21:09 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 13.b deep-scrubstarts
    > Mar 21 14:21:10 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 13.1a deep-scrubstarts
    > Mar 21 14:21:17 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 13.1c deep-scrubstarts
    > Mar 21 14:21:19 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 11.1 scrubstarts
    > Mar 21 14:21:27 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 14.6 scrubstarts
    > Mar 21 14:21:30 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 10.c deep-scrubstarts
    > Mar 21 14:21:35 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 12.3 deep-scrubstarts
    > Mar 21 14:21:41 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 6.0 scrubstarts
    > Mar 21 14:21:44 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 8.5 deep-scrubstarts
    > Mar 21 14:21:45 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 5.66 deep-scrubstarts
    > Mar 21 14:21:49 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 5.30 deep-scrubstarts
    > Mar 21 14:21:50 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 13.b deep-scrubstarts
    > Mar 21 14:21:52 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 13.1a deep-scrubstarts
    > Mar 21 14:21:54 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 13.1c deep-scrubstarts
    > Mar 21 14:21:55 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 11.1 scrubstarts
    > Mar 21 14:21:58 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 14.6 scrubstarts
    > Mar 21 14:22:01 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 10.c deep-scrubstarts
    > Mar 21 14:22:04 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 12.3 scrubstarts
    > Mar 21 14:22:13 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 6.0 scrubstarts
    > Mar 21 14:22:15 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 8.5 deep-scrubstarts
    > Mar 21 14:22:20 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 5.66 deep-scrubstarts
    > Mar 21 14:22:27 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 5.30 scrubstarts
    > Mar 21 14:22:30 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 13.b deep-scrubstarts
    > Mar 21 14:22:32 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 13.1a deep-scrubstarts
    > Mar 21 14:22:33 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 13.1c deep-scrubstarts
    > Mar 21 14:22:35 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 11.1 deep-scrubstarts
    > Mar 21 14:22:37 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 14.6 scrubstarts
    > Mar 21 14:22:38 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 10.c scrubstarts
    > Mar 21 14:22:39 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 12.3 scrubstarts
    > Mar 21 14:22:41 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 6.0 deep-scrubstarts
    > Mar 21 14:22:43 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 8.5 deep-scrubstarts
    > Mar 21 14:22:46 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 5.66 deep-scrubstarts
    > Mar 21 14:22:49 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 5.30 scrubstarts
    > Mar 21 14:22:55 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 13.b deep-scrubstarts
    > Mar 21 14:22:57 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 13.1a deep-scrubstarts
    > Mar 21 14:22:58 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 13.1c deep-scrubstarts
    > Mar 21 14:23:03 ceph-node10 ceph-osd[3804193]: log_channel(cluster)
    > log [DBG] : 11.1 deep-scrubstarts
    >
    >
    >
    > *
    > *The amount of scrubbed/deep-scrubbed pgs changes every few seconds.
    >
    > [root@ceph-node10 ~]# ceph -s | grep active+clean
    >    pgs:     214 active+clean
    >             50 active+clean+scrubbing+deep
    >             25 active+clean+scrubbing
    > [root@ceph-node10 ~]# ceph -s | grep active+clean
    >    pgs:     208 active+clean
    >             53 active+clean+scrubbing+deep
    >             28 active+clean+scrubbing
    > [root@ceph-node10 ~]# ceph -s | grep active+clean
    >    pgs:     208 active+clean
    >             53 active+clean+scrubbing+deep
    >             28 active+clean+scrubbing
    > [root@ceph-node10 ~]# ceph -s | grep active+clean
    >    pgs:     207 active+clean
    >             54 active+clean+scrubbing+deep
    >             28 active+clean+scrubbing
    > [root@ceph-node10 ~]# ceph -s | grep active+clean
    >    pgs:     202 active+clean
    >             56 active+clean+scrubbing+deep
    >             31 active+clean+scrubbing
    > [root@ceph-node10 ~]# ceph -s | grep active+clean
    >    pgs:     213 active+clean
    >             45 active+clean+scrubbing+deep
    >             31 active+clean+scrubbing
    >
    > ceph pg dump showing PGs which are not deep scrubbed since january.
    > Some PGs deep scrubbing  over 700000 seconds.
    >
    > *[ceph: root@ceph-node10 /]#  ceph pg dump pgs | grep -e
    'scrubbing f'
    > 5.6e      221223                   0         0          0        0
    >  927795290112            0           0  4073      3000      4073
    >  active+clean+scrubbing+deep  2024-03-20T01:07:21.196293+
    > 0000  128383'15766927  128383:20517419   [2,4,18,16,14,21]
              2
    >   [2,4,18,16,14,21]               2  125519'12328877
    >  2024-01-23T11:25:35.503811+0000  124844'11873951  2024-01-21T22:
    > 24:12.620693+0000              0                    5  deep
    scrubbing
    > for 270790s                                             53772
    >                0
    > 5.6c      221317                   0         0          0        0
    >  928173256704            0           0  6332         0      6332
    >  active+clean+scrubbing+deep  2024-03-18T09:29:29.233084+
    > 0000  128382'15788196  128383:20727318     [6,9,12,14,1,4]
              6
    >     [6,9,12,14,1,4]               6  127180'14709746
    >  2024-03-06T12:47:57.741921+0000  124817'11821502  2024-01-20T20:
    > 59:40.566384+0000              0                13452  deep
    scrubbing
    > for 273519s                                            122803
    >                0
    > 5.6a      221325                   0         0          0        0
    >  928184565760            0           0  4649      3000      4649
    >  active+clean+scrubbing+deep  2024-03-13T03:48:54.065125+
    > 0000  128382'16031499  128383:21221685     [13,11,1,2,9,8]
             13
    >     [13,11,1,2,9,8]              13  127181'14915404
    >  2024-03-06T13:16:58.635982+0000  125967'12517899  2024-01-28T09:
    > 13:08.276930+0000              0                10078  deep
    scrubbing
    > for 726001s                                            184819
    >                0
    > 5.54      221050                   0         0          0        0
    >  927036203008            0           0  4864      3000      4864
    >  active+clean+scrubbing+deep  2024-03-18T00:17:48.086231+
    > 0000  128383'15584012  128383:20293678  [0,20,18,19,11,12]
              0
    >  [0,20,18,19,11,12]               0  127195'14651908
    >  2024-03-07T09:22:31.078448+0000  124816'11813857  2024-01-20T16:
    > 43:15.755200+0000              0                 9808  deep
    scrubbing
    > for 306667s                                            142126
    >                0
    > 5.47      220849                   0         0          0        0
    >  926233448448            0           0  5592         0      5592
    >  active+clean+scrubbing+deep  2024-03-12T08:10:39.413186+
    > 0000  128382'15653864  128383:20403071  [16,15,20,0,13,21]
             16
    >  [16,15,20,0,13,21]              16  127183'14600433
    >  2024-03-06T18:21:03.057165+0000  124809'11792397  2024-01-20T05:
    > 27:07.617799+0000              0                13066  deep
    scrubbing
    > for 796697s                                            209193
    >                0
    > dumped pgs
    >
    >
    > *
    >
    >
    > regards
    > Bernhard
    >
    >
    >
    >
    >
    >
    > On 20/03/2024 21:12, Bandelow, Gunnar wrote:
    >> Hi,
    >>
    >> i just wanted to mention, that i am running a cluster with reef
    >> 18.2.1 with the same issue.
    >>
    >> 4 PGs start to deepscrub but dont finish since mid february. In
    the
    >> pg dump they are shown as scheduled for deep scrub. They sometimes
    >> change their status from active+clean to
    active+clean+scrubbing+deep
    >> and back.
    >>
    >> Best regards,
    >> Gunnar
    >>
    >> =======================================================
    >>
    >> Gunnar Bandelow
    >> Universitätsrechenzentrum (URZ)
    >> Universität Greifswald
    >> Felix-Hausdorff-Straße 18
    >> 17489 Greifswald
    >> Germany
    >>
    >> Tel.: +49 3834 420 1450
    >>
    >>
    >>
    >>
    >> --- Original Nachricht ---
    >> *Betreff: * Re: Reef (18.2): Some PG not scrubbed/deep
    >> scrubbed for 1 month
    >> *Von: *"Michel Jouvin" <michel.jouvin@xxxxxxxxxxxxxxx
    <mailto:michel.jouvin@xxxxxxxxxxxxxxx>
    >> <michel.jouvin@xxxxxxxxxxxxxxx
    <mailto:michel.jouvin@xxxxxxxxxxxxxxx>>>
    >> *An: *ceph-users@xxxxxxx <mailto:ceph-users@xxxxxxx>
    <ceph-users@xxxxxxx <mailto:ceph-users@xxxxxxx>>
    >> *Datum: *20-03-2024 20:00
    >>
    >>
    >>
    >>     Hi Rafael,
    >>
    >>     Good to know I am not alone!
    >>
    >>     Additional information ~6h after the OSD restart: over the
    20 PGs
    >>     impacted, 2 have been processed successfully... I don't
    have a clear
    >>     picture on how Ceph prioritize the scrub of one PG over
    another, I
    >>     had
    >>     thought that the oldest/expired scrubs are taken first but
    it may
    >>     not be
    >>     the case. Anyway, I have seen a very significant decrese of
    the
    >> scrub
    >>     activity this afternoon and the cluster is not loaded at all
    >>     (almost no
    >>     users yet)...
    >>
    >>     Michel
    >>
    >>     Le 20/03/2024 à 17:55, quaglio@xxxxxxxxxx
    <mailto:quaglio@xxxxxxxxxx>
    >>     <quaglio@xxxxxxxxxx <mailto:quaglio@xxxxxxxxxx>> a écrit :
    >>     > Hi,
    >>     >      I upgraded a cluster 2 weeks ago here. The situation
    is the
    >>     same
    >>     > as Michel.
    >>     >      A lot of PGs no scrubbed/deep-scrubed.
    >>     >
    >>     > Rafael.
    >>     >
    >>     > _______________________________________________
    >>     > ceph-users mailing list -- ceph-users@xxxxxxx
    <mailto:ceph-users@xxxxxxx>
    >>     <ceph-users@xxxxxxx <mailto:ceph-users@xxxxxxx>>
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    <mailto:ceph-users-leave@xxxxxxx>
    >>     <ceph-users-leave@xxxxxxx <mailto:ceph-users-leave@xxxxxxx>>
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    >>     ceph-users mailing list -- ceph-users@xxxxxxx
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    >>     <ceph-users@xxxxxxx <mailto:ceph-users@xxxxxxx>>
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    <mailto:ceph-users-leave@xxxxxxx>
    >>     <ceph-users-leave@xxxxxxx <mailto:ceph-users-leave@xxxxxxx>>
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    >>
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