Re: How to remove remaining bucket index shard objects

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Hi,

Mysteriously, the large omap objects alert recurred recently. The values for omap_used_mbytes and omap_used_keys are slightly different from the previous investigation, but very close. Our team is going to keep this cluster to investigate and create another cluster to work. Therefore, my reply may be slow.
Previous values:
https://lists.ceph.io/hyperkitty/list/ceph-users@xxxxxxx/message/TNQM2W4EDG3J33W7CML2JLCDNFDA6Q3W/

```
$ kubectl exec -n ceph-poc deploy/rook-ceph-tools -- ceph -s                                                                                  cluster:
    id:     49bd471e-84e6-412e-8ed0-75d7bc176657
    health: HEALTH_WARN
            25 large omap objects

  services:
    mon: 3 daemons, quorum b,d,f (age 36h)
    mgr: b(active, since 38h), standbys: a
    osd: 96 osds: 96 up (since 31h), 96 in (since 31h)
    rgw: 6 daemons active (6 hosts, 2 zones)

  data:
    pools:   16 pools, 4432 pgs
    objects: 10.74k objects, 34 GiB
    usage:   158 GiB used, 787 TiB / 787 TiB avail
    pgs:     4432 active+clean

  io:
    client:   2.2 KiB/s rd, 169 B/s wr, 2 op/s rd, 0 op/s wr
```

```
$ (header="id used_mbytes used_objects omap_used_mbytes omap_used_keys"
>   echo "${header}"
>   echo "${header}" | tr '[[:alpha:]_' '-'
>   kubectl exec -n ceph-poc deploy/rook-ceph-tools -- ceph pg ls-by-pool "${OSD_POOL}" --format=json | jq -r '.pg_stats |
>   sort_by(.stat_sum.num_bytes) | .[] | (.pgid, .stat_sum.num_bytes/1024/1024,
>   .stat_sum.num_objects, .stat_sum.num_omap_bytes/1024/1024,
>   .stat_sum.num_omap_keys)' | paste - - - - -) | column -t
id    used_mbytes  used_objects  omap_used_mbytes    omap_used_keys
--    -----------  ------------  ----------------    --------------
6.0   0            0             0                   0
6.1   0            0             0                   0
6.2   0            0             86.14682674407959   298586
6.3   0            0             93.08089542388916   323902
6.4   0            1             0                   0
6.5   0            1             0                   0
6.6   0            0             0                   0
6.7   0            0             0                   0
6.8   0            0             0                   0
6.9   0            0             439.5090618133545   1524746
6.a   0            0             0                   0
6.b   0            0             3.4069366455078125  12416
6.c   0            0             0                   0
6.d   0            0             0                   0
6.e   0            0             0                   0
6.f   0            1             0                   0
6.10  0            1             0                   0
6.11  0            0             0                   0
6.12  0            0             7.727175712585449   28160
6.13  0            0             114.01904964447021  394996
6.14  0            0             0                   0
6.15  0            0             0                   0
6.16  0            0             0                   0
6.17  0            0             7.6217451095581055  27776
6.18  0            0             0                   0
6.19  0            1             0                   0
6.1a  0            1             0                   0
6.1b  0            0             0                   0
6.1c  0            0             88.36568355560303   306677
6.1d  0            0             0                   0
6.1e  0            1             0                   0
6.1f  0            0             0                   0
6.20  0            1             0                   0
6.21  0            0             0                   0
6.22  0            0             5.883256912231445   21440
6.23  0            0             0                   0
6.24  0            0             7.938144683837891   28928
6.25  0            0             0                   0
6.26  0            0             4.267669677734375   15552
6.27  0            1             0                   0
6.28  0            0             0                   0
6.29  0            0             2.1601409912109375  7872
6.2a  0            1             0                   0
6.2b  0            0             0                   0
6.2c  0            0             5.479369163513184   19968
6.2d  0            0             0                   0
6.2e  0            0             0                   0
6.2f  0            0             0                   0
6.30  0            0             0                   0
6.31  0            1             0                   0
6.32  0            1             0                   0
6.33  0            0             5.812973976135254   21184
6.34  0            0             0                   0
6.35  0            0             0                   0
6.36  0            0             5.865510940551758   21376
6.37  0            0             0                   0
6.38  0            0             93.97305393218994   327089
6.39  0            0             15.493829727172852  71787
6.3a  0            0             0                   0
6.3b  0            0             4.056745529174805   14784
6.3c  0            0             4.039289474487305   14720
6.3d  0            0             0                   0
6.3e  0            0             0                   0
6.3f  0            0             0                   0
6.40  0            0             0                   0
6.41  0            1             4.004250526428223   14592
6.42  0            0             0                   0
6.43  0            0             345.3690414428711   1197068
6.44  0            0             0                   0
6.45  0            1             0                   0
6.46  0            0             0                   0
6.47  0            0             0                   0
6.48  0            0             0                   0
6.49  0            0             263.9479990005493   914805
6.4a  0            0             94.751708984375     336275
6.4b  0            0             7.604428291320801   27712
6.4c  0            0             0                   0
6.4d  0            0             270.53627490997314  937581
6.4e  0            1             0                   0
6.4f  0            0             11.229312896728516  55949
6.50  0            0             1.8790569305419922  6848
6.51  0            1             0                   0
6.52  0            0             4.05673885345459    14784
6.53  0            0             0                   0
6.54  0            0             42.36539554595947   146958
6.55  0            0             0                   0
6.56  0            0             27.734545707702637  133186
6.57  0            0             0                   0
6.58  0            0             0                   0
6.59  0            0             1.4927978515625     5440
6.5a  0            0             3.775785446166992   13760
6.5b  0            0             3.722942352294922   13568
6.5c  0            0             0                   0
6.5d  0            1             0                   0
6.5e  0            0             0                   0
6.5f  0            0             0                   0
6.60  0            0             0                   0
6.61  0            0             5.865522384643555   21376
6.62  0            0             0                   0
6.63  0            0             0                   0
6.64  0            0             14.687395095825195  67716
6.65  0            0             4.021788597106934   14656
6.66  0            1             0                   0
6.67  0            0             0                   0
6.68  0            0             0                   0
6.69  0            0             13.16762924194336   65594
6.6a  0            0             7.709336280822754   28096
6.6b  0            0             0                   0
6.6c  0            0             1.7913312911987305  6528
6.6d  0            0             0                   0
6.6e  0            0             1.8790216445922852  6848
6.6f  0            0             0                   0
6.70  0            3             0                   0
6.71  0            0             6.041498184204102   22016
6.72  0            0             1.8790807723999023  6848
6.73  0            0             1.8790874481201172  6848
6.74  0            0             0                   0
6.75  0            0             170.30711841583252  590287
6.76  0            0             5.848110198974609   21312
6.77  0            0             86.37962532043457   299393
6.78  0            0             2.1776771545410156  7936
6.79  0            0             2.2303342819213867  8128
6.7a  0            1             0                   0
6.7b  0            0             0                   0
6.7c  0            0             90.31485748291016   313783
6.7d  0            0             0                   0
6.7e  0            0             0                   0
6.7f  0            0             12.507318496704102  62305
```

Thanks,
Yuji
________________________________
From: Yuji Ito (伊藤 祐司) <yuji-ito@xxxxxxxxxxxx>
Sent: Tuesday, October 25, 2022 10:33
To: Konstantin Shalygin <k0ste@xxxxxxxx>
Cc: ceph-users@xxxxxxx <ceph-users@xxxxxxx>
Subject:  Re: How to remove remaining bucket index shard objects

Hi,

The large omap alert looks resolved last week, Although I don't know the underlying reasons.
When I got your email and tried to get the data, I noticed that the alerts had stopped. OMAP was 0 Bytes as follows. To make sure, I ran a deep scrub and waited for a while, but the alert has not recurred until now. Before the alerts stopped, the other team restarted the node where OSD and other modules were running for maintenance, which may have had an impact. However, reboots are done every week and have been done three times after compaction. It is therefore uncertain as to the root reason. There is a possibility of recurrence, so I will take a wait-and-see approach.

```
$ kubectl exec -n ceph-poc deploy/rook-ceph-tools -- ceph -s
  cluster:
    id:     49bd471e-84e6-412e-8ed0-75d7bc176657
    health: HEALTH_OK

  services:
    mon: 3 daemons, quorum b,d,f (age 4d)
    mgr: b(active, since 4d), standbys: a
    osd: 96 osds: 96 up (since 4d), 96 in (since 4d)
    rgw: 6 daemons active (6 hosts, 2 zones)

  data:
    pools:   16 pools, 4432 pgs
    objects: 10.19k objects, 34 GiB
    usage:   161 GiB used, 787 TiB / 787 TiB avail
    pgs:     4432 active+clean

  io:
    client:   3.1 KiB/s rd, 931 B/s wr, 3 op/s rd, 2 op/s wr

$ OSD_POOL=ceph-poc-object-store-ssd-index.rgw.buckets.index
$ (header="id used_mbytes used_objects omap_used_mbytes omap_used_keys"
>   echo "${header}"
>   echo "${header}" | tr '[[:alpha:]_' '-'
>   kubectl exec -n ceph-poc deploy/rook-ceph-tools -- ceph pg ls-by-pool "${OSD_POOL}" --format=json | jq -r '.pg_stats |
>   sort_by(.stat_sum.num_bytes) | .[] | (.pgid, .stat_sum.num_bytes/1024/1024,
>   .stat_sum.num_objects, .stat_sum.num_omap_bytes/1024/1024,
>   .stat_sum.num_omap_keys)' | paste - - - - -) | column -t
id    used_mbytes  used_objects  omap_used_mbytes  omap_used_keys
--    -----------  ------------  ----------------  --------------
6.0   0            0             0                 0
6.1   0            0             0                 0
6.2   0            0             0                 0
6.3   0            0             0                 0
6.4   0            1             0                 0
6.5   0            1             0                 0
6.6   0            0             0                 0
6.7   0            0             0                 0
6.8   0            0             0                 0
6.9   0            0             0                 0
6.a   0            0             0                 0
6.b   0            0             0                 0
6.c   0            0             0                 0
6.d   0            0             0                 0
6.e   0            0             0                 0
6.f   0            1             0                 0
6.10  0            1             0                 0
6.11  0            0             0                 0
6.12  0            0             0                 0
6.13  0            0             0                 0
6.14  0            0             0                 0
6.15  0            0             0                 0
6.16  0            0             0                 0
6.17  0            0             0                 0
6.18  0            0             0                 0
6.19  0            1             0                 0
6.1a  0            1             0                 0
6.1b  0            0             0                 0
6.1c  0            0             0                 0
6.1d  0            0             0                 0
6.1e  0            1             0                 0
6.1f  0            0             0                 0
6.20  0            1             0                 0
6.21  0            0             0                 0
6.22  0            0             0                 0
6.23  0            0             0                 0
6.24  0            0             0                 0
6.25  0            0             0                 0
6.26  0            0             0                 0
6.27  0            1             0                 0
6.28  0            0             0                 0
6.29  0            0             0                 0
6.2a  0            1             0                 0
6.2b  0            0             0                 0
6.2c  0            0             0                 0
6.2d  0            0             0                 0
6.2e  0            0             0                 0
6.2f  0            0             0                 0
6.30  0            0             0                 0
6.31  0            1             0                 0
6.32  0            1             0                 0
6.33  0            0             0                 0
6.34  0            0             0                 0
6.35  0            0             0                 0
6.36  0            0             0                 0
6.37  0            0             0                 0
6.38  0            0             0                 0
6.39  0            0             0                 0
6.3a  0            0             0                 0
6.3b  0            0             0                 0
6.3c  0            0             0                 0
6.3d  0            0             0                 0
6.3e  0            0             0                 0
6.3f  0            0             0                 0
6.40  0            0             0                 0
6.41  0            1             0                 0
6.42  0            0             0                 0
6.43  0            0             0                 0
6.44  0            0             0                 0
6.45  0            1             0                 0
6.46  0            0             0                 0
6.47  0            0             0                 0
6.48  0            0             0                 0
6.49  0            0             0                 0
6.4a  0            0             0                 0
6.4b  0            0             0                 0
6.4c  0            0             0                 0
6.4d  0            0             0                 0
6.4e  0            1             0                 0
6.4f  0            0             0                 0
6.50  0            0             0                 0
6.51  0            1             0                 0
6.52  0            0             0                 0
6.53  0            0             0                 0
6.54  0            0             0                 0
6.55  0            0             0                 0
6.56  0            0             0                 0
6.57  0            0             0                 0
6.58  0            0             0                 0
6.59  0            0             0                 0
6.5a  0            0             0                 0
6.5b  0            0             0                 0
6.5c  0            0             0                 0
6.5d  0            1             0                 0
6.5e  0            0             0                 0
6.5f  0            0             0                 0
6.60  0            0             0                 0
6.61  0            0             0                 0
6.62  0            0             0                 0
6.63  0            0             0                 0
6.64  0            0             0                 0
6.65  0            0             0                 0
6.66  0            1             0                 0
6.67  0            0             0                 0
6.68  0            0             0                 0
6.69  0            0             0                 0
6.6a  0            0             0                 0
6.6b  0            0             0                 0
6.6c  0            0             0                 0
6.6d  0            0             0                 0
6.6e  0            0             0                 0
6.6f  0            0             0                 0
6.70  0            3             0                 0
6.71  0            0             0                 0
6.72  0            0             0                 0
6.73  0            0             0                 0
6.74  0            0             0                 0
6.75  0            0             0                 0
6.76  0            0             0                 0
6.77  0            0             0                 0
6.78  0            0             0                 0
6.79  0            0             0                 0
6.7a  0            1             0                 0
6.7b  0            0             0                 0
6.7c  0            0             0                 0
6.7d  0            0             0                 0
6.7e  0            0             0                 0
6.7f  0            0             0                 0
```

Thanks,
Yuji

From: Konstantin Shalygin <k0ste@xxxxxxxx>
Sent: Wednesday, October 19, 2022 16:42
To: Yuji Ito (伊藤 祐司) <yuji-ito@xxxxxxxxxxxx>
Cc: ceph-users@xxxxxxx <ceph-users@xxxxxxx>
Subject: Re:  How to remove remaining bucket index shard objects

This strange stats, at least one object should be exists for this OMAP's. Try to deep-scrub this PG, try to list objects in this PG `rados ls --pgid 6.2`


k
Sent from my iPhone
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