Re: High CPU usage by ceph-mgr in 14.2.5

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yesterday:
https://ceph.io/releases/v14-2-6-nautilus-released/


Cheers,
Lars

Thu, 9 Jan 2020 10:10:12 +0100
Wido den Hollander <wido@xxxxxxxx> ==> Neha Ojha <nojha@xxxxxxxxxx>, Sasha Litvak <alexander.v.litvak@xxxxxxxxx> :
> On 12/24/19 9:19 PM, Neha Ojha wrote:
> > The root cause of this issue is the overhead added by the network ping
> > time monitoring feature for the mgr to process.
> > We have a fix that disables sending the network ping times related
> > stats to the mgr and Eric has helped verify the fix(Thanks Eric!) -
> > https://tracker.ceph.com/issues/43364#note-9. We'll get this fix out
> > in 14.2.6 after the holidays.
> >   
> 
> It's after the holidays now and this is affecting a lot of deployments.
> Can people expect 14.2.6 soon?
> 
> Wido
> 
> > 
> > 
> > On Fri, Dec 20, 2019 at 6:24 PM Neha Ojha <nojha@xxxxxxxxxx> wrote:  
> >>
> >> Not yet, but we have a theory and a test build in
> >> https://tracker.ceph.com/issues/43364#note-6, if anybody would like to
> >> give it a try.
> >>
> >> Thanks,
> >> Neha
> >>
> >> On Fri, Dec 20, 2019 at 2:31 PM Sasha Litvak
> >> <alexander.v.litvak@xxxxxxxxx> wrote:  
> >>>
> >>> Was the root cause found and fixed?  If so, will the fix be available in 14.2.6 or sooner?
> >>>
> >>> On Thu, Dec 19, 2019 at 5:48 PM Mark Nelson <mnelson@xxxxxxxxxx> wrote:  
> >>>>
> >>>> Hi Paul,
> >>>>
> >>>>
> >>>> Thanks for gathering this!  It looks to me like at the very least we
> >>>> should redo the fixed_u_to_string and fixed_to_string functions in
> >>>> common/Formatter.cc.  That alone looks like it's having a pretty
> >>>> significant impact.
> >>>>
> >>>>
> >>>> Mark
> >>>>
> >>>>
> >>>> On 12/19/19 2:09 PM, Paul Mezzanini wrote:  
> >>>>> Based on what we've seen with perf, we think this is the relevant section.  (attached is also the whole file)
> >>>>>
> >>>>> Thread: 73 (mgr-fin) - 1000 samples
> >>>>>
> >>>>> + 100.00% clone
> >>>>>    + 100.00% start_thread
> >>>>>      + 100.00% Finisher::finisher_thread_entry()
> >>>>>        + 99.40% Context::complete(int)
> >>>>>        | + 99.40% FunctionContext::finish(int)
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> >>>>>        |     |             |       + 2.70% PyFormatter::finish_pending_streams()
> >>>>>        |     |             |       | + 1.00% std::_List_base<std::shared_ptr<PyFormatter::PendingStream>, std::allocator<std::shared_ptr<PyFormatter::PendingStream> > >::_M_clear()
> >>>>>        |     |             |       | | + 0.40% std::_Sp_counted_ptr_inplace<PyFormatter::PendingStream, std::allocator<PyFormatter::PendingStream>, (__gnu_cxx::_Lock_policy)2>::_M_dispose()
> >>>>>        |     |             |       | | + 0.20% tcmalloc::ThreadCache::ListTooLong(tcmalloc::ThreadCache::FreeList*, unsigned int)
> >>>>>        |     |             |       | + 0.70% PyFormatter::dump_pyobject(char const*, _object*)
> >>>>>        |     |             |       | + 0.50% std::string::replace(unsigned long, unsigned long, char const*, unsigned long)
> >>>>>        |     |             |       | + 0.30% PyString_FromString
> >>>>>        |     |             |       + 1.10% PyEval_RestoreThread
> >>>>>        |     |             |         + 1.10% PyThread_acquire_lock
> >>>>>        |     |             |           + 1.10% sem_wait@@GLIBC_2.2.5
> >>>>>        |     |             |             + 1.10% __new_sem_wait_slow.constprop.0
> >>>>>        |     |             |               + 1.10% do_futex_wait.constprop.1
> >>>>>        |     |             + 2.90% frame_dealloc
> >>>>>        |     |               + 2.90% dict_dealloc
> >>>>>        |     |                 + 2.90% list_dealloc
> >>>>>        |     |                   + 2.90% dict_dealloc
> >>>>>        |     |                     + 1.90% list_dealloc
> >>>>>        |     |                     | + 1.90% dict_dealloc
> >>>>>        |     |                     |   + 1.70% list_dealloc
> >>>>>        |     |                     |     + 1.50% dict_dealloc
> >>>>>        |     |                     |     | + 0.90% dict_dealloc
> >>>>>        |     |                     |     | + 0.10% PyObject_Free
> >>>>>        |     |                     |     + 0.10% tcmalloc::ThreadCache::ListTooLong(tcmalloc::ThreadCache::FreeList*, unsigned int)
> >>>>>        |     |                     + 0.30% PyObject_Free
> >>>>>        |     |                     + 0.20% dict_dealloc
> >>>>>        |     + 8.10% Gil::Gil(SafeThreadState&, bool)
> >>>>>        |       + 8.10% PyEval_RestoreThread
> >>>>>        |         + 8.10% PyThread_acquire_lock
> >>>>>        |           + 8.10% sem_wait@@GLIBC_2.2.5
> >>>>>        |             + 8.10% __new_sem_wait_slow.constprop.0
> >>>>>        |               + 8.10% do_futex_wait.constprop.1
> >>>>>        + 0.60% std::condition_variable::wait(std::unique_lock<std::mutex>&)
> >>>>>
> >>>>> --
> >>>>> Paul Mezzanini
> >>>>> Sr Systems Administrator / Engineer, Research Computing
> >>>>> Information & Technology Services
> >>>>> Finance & Administration
> >>>>> Rochester Institute of Technology
> >>>>> o:(585) 475-3245 | pfmeec@xxxxxxx
> >>>>>
> >>>>> CONFIDENTIALITY NOTE: The information transmitted, including attachments, is
> >>>>> intended only for the person(s) or entity to which it is addressed and may
> >>>>> contain confidential and/or privileged material. Any review, retransmission,
> >>>>> dissemination or other use of, or taking of any action in reliance upon this
> >>>>> information by persons or entities other than the intended recipient is
> >>>>> prohibited. If you received this in error, please contact the sender and
> >>>>> destroy any copies of this information.
> >>>>> ------------------------
> >>>>>
> >>>>> ________________________________________
> >>>>> From: Mark Nelson <mnelson@xxxxxxxxxx>
> >>>>> Sent: Thursday, December 19, 2019 11:47 AM
> >>>>> To: ceph-users@xxxxxxx
> >>>>> Subject:  Re: High CPU usage by ceph-mgr in 14.2.5
> >>>>>
> >>>>> If you can get a wallclock profiler on the mgr process we might be able
> >>>>> to figure out specifics of what's taking so much time (ie processing
> >>>>> pg_summary or something else).  Assuming you have gdb with the python
> >>>>> bindings and the ceph debug packages installed, if you (are anyone)
> >>>>> could try gdbpmp on the 100% mgr process that would be fantastic.
> >>>>>
> >>>>>
> >>>>> https://github.com/markhpc/gdbpmp
> >>>>>
> >>>>>
> >>>>> gdbpmp.py -p`pidof ceph-mgr` -n 1000 -o mgr.gdbpmp
> >>>>>
> >>>>>
> >>>>> If you want to view the results:
> >>>>>
> >>>>>
> >>>>> gdbpmp.py -i mgr.gdbpmp -t 1
> >>>>>
> >>>>>
> >>>>> Thanks,
> >>>>>
> >>>>> Mark
> >>>>>
> >>>>>
> >>>>> On 12/19/19 6:29 AM, Paul Emmerich wrote:  
> >>>>>> We're also seeing unusually high mgr CPU usage on some setups, the
> >>>>>> only thing they have in common seem to > 300 OSDs.
> >>>>>>
> >>>>>> Threads using the CPU are "mgr-fin" and and "ms_dispatch"
> >>>>>>
> >>>>>>
> >>>>>> Paul
> >>>>>>
> >>>>>> --
> >>>>>> Paul Emmerich
> >>>>>>
> >>>>>> Looking for help with your Ceph cluster? Contact us at https://croit.io
> >>>>>>
> >>>>>> croit GmbH
> >>>>>> Freseniusstr. 31h
> >>>>>> 81247 München
> >>>>>> www.croit.io <http://www.croit.io>
> >>>>>> Tel: +49 89 1896585 90
> >>>>>>
> >>>>>>
> >>>>>> On Thu, Dec 19, 2019 at 9:40 AM Serkan Çoban <cobanserkan@xxxxxxxxx
> >>>>>> <mailto:cobanserkan@xxxxxxxxx>> wrote:
> >>>>>>
> >>>>>>      +1
> >>>>>>      1500 OSDs, mgr is constant %100 after upgrading from 14.2.2 to 14.2.5.
> >>>>>>
> >>>>>>      On Thu, Dec 19, 2019 at 11:06 AM Toby Darling
> >>>>>>      <toby@xxxxxxxxxxxxxxxxx <mailto:toby@xxxxxxxxxxxxxxxxx>> wrote:  
> >>>>>>      >
> >>>>>>      > On 18/12/2019 22:40, Bryan Stillwell wrote:  
> >>>>>>      > > That's how we noticed it too.  Our graphs went silent after  
> >>>>>>      the upgrade  
> >>>>>>      > > completed.  Is your large cluster over 350 OSDs?  
> >>>>>>      >
> >>>>>>      > A 'me too' on this - graphs have gone quiet, and mgr is using  
> >>>>>>      100% CPU.  
> >>>>>>      > This happened when we grew our 14.2.5 cluster from 328 to 436 OSDs.
> >>>>>>      >
> >>>>>>      > Cheers
> >>>>>>      > Toby
> >>>>>>      > --
> >>>>>>      > Toby Darling, Scientific Computing (2N249)
> >>>>>>      > MRC Laboratory of Molecular Biology
> >>>>>>      > Francis Crick Avenue
> >>>>>>      > Cambridge Biomedical Campus
> >>>>>>      > Cambridge CB2 0QH
> >>>>>>      > Phone 01223 267070
> >>>>>>      > _______________________________________________
> >>>>>>      > ceph-users mailing list -- ceph-users@xxxxxxx  
> >>>>>>      <mailto:ceph-users@xxxxxxx>  
> >>>>>>      > To unsubscribe send an email to ceph-users-leave@xxxxxxx  
> >>>>>>      <mailto:ceph-users-leave@xxxxxxx>
> >>>>>>      _______________________________________________
> >>>>>>      ceph-users mailing list -- ceph-users@xxxxxxx
> >>>>>>      <mailto:ceph-users@xxxxxxx>
> >>>>>>      To unsubscribe send an email to ceph-users-leave@xxxxxxx
> >>>>>>      <mailto:ceph-users-leave@xxxxxxx>
> >>>>>>
> >>>>>>
> >>>>>> _______________________________________________
> >>>>>> ceph-users mailing list -- ceph-users@xxxxxxx
> >>>>>> To unsubscribe send an email to ceph-users-leave@xxxxxxx  
> >>>>> _______________________________________________
> >>>>> ceph-users mailing list -- ceph-users@xxxxxxx
> >>>>> To unsubscribe send an email to ceph-users-leave@xxxxxxx  
> >>>> _______________________________________________
> >>>> ceph-users mailing list -- ceph-users@xxxxxxx
> >>>> To unsubscribe send an email to ceph-users-leave@xxxxxxx  
> >>>
> >>> _______________________________________________
> >>> ceph-users mailing list -- ceph-users@xxxxxxx
> >>> To unsubscribe send an email to ceph-users-leave@xxxxxxx  
> > _______________________________________________
> > ceph-users mailing list -- ceph-users@xxxxxxx
> > To unsubscribe send an email to ceph-users-leave@xxxxxxx
> >   
> _______________________________________________
> ceph-users mailing list -- ceph-users@xxxxxxx
> To unsubscribe send an email to ceph-users-leave@xxxxxxx


-- 
                            Informationstechnologie
Berlin-Brandenburgische Akademie der Wissenschaften
Jägerstraße 22-23                      10117 Berlin
Tel.: +49 30 20370-352           http://www.bbaw.de
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