scrub errors because of missing shards on luminous

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Dear ml,

we are currently trying to wrap our heads around a HEALTH_ERR problem on
our Luminous 12.2.12 cluster (upgraded from Jewel a couple of weeks
ago). Before attempting a 'ceph pg repair' we would like to have a
better understanding of what has happened.

ceph -s reports:

cluster:
    id:     7705608d-cbef-477a-865d-f5ae4c03370a
    health: HEALTH_ERR
            14 scrub errors
            Possible data damage: 5 pgs inconsistent

  services:
    mon: 5 daemons, quorum mon-k3-38,mon-k5-41,mon-l2-40,mon-l7-40,mon-k4-32
    mgr: mon-l2-40(active), standbys: mon-l7-40, mon-k3-38, mon-k5-41,
mon-k4-32
    osd: 1332 osds: 1332 up, 1332 in

  data:
    pools:   4 pools, 49160 pgs
    objects: 342.85M objects, 1.23PiB
    usage:   3.73PiB used, 1.39PiB / 5.11PiB avail
    pgs:     49112 active+clean
             34    active+clean+scrubbing+deep
             9     active+clean+scrubbing
             5     active+clean+inconsistent

  io:
    client:   450MiB/s rd, 411MiB/s wr, 5.10kop/s rd, 2.33kop/s wr


It all seem to have originated from the deletion of an old RBD image
snapshot (cinder volume snapshot) that caused:
- an unusual load spike on most OSD nodes.
- a number of osds being concurrently marked down by mon "despite being
running"

We are now observing an increasing number of scrub errors as
deep-scrubbing progresses, with all inconsistent PGs belonging to the
same pool and all the missing objects to the same RBD image whose
snapshot has been deleted.

Attempting to troubleshoot the situation we realized we don't have a
clear understanding of how an image with snapshots evolves over time:
a RBD image has a preset number of objects but once a snapshot has been
taken and the image starts to diverge from the snapshot more objects
will eventually be needed, correct?

I am attaching the output of 'rados list-inconsistent-obj' ran against
the inconsistent PGs.

We can see two kinds of errors:
- "union_shard_errors": "missing"
- "errors:" "object_info_inconsistency",
            "snapset_inconsistency"

The pool has size=3 and min_size=2, the image size is 5TB with 4MB objects.

Has anyone experienced a similar issue? I could not find anything
relevant in the issue tracker but I'll be happy to open a case if this
turns out to be a bug.

Thanks in advance for any hints,

Kind regards,
Mattia Belluco
{
    "epoch": 381704,
    "inconsistents": [
        {
            "object": {
                "name": "rbd_data.20c737083e5fdc6e.00000000000dc733",
                "nspace": "",
                "locator": "",
                "snap": 16970,
                "version": 4532671
            },
            "errors": [],
            "union_shard_errors": [
                "missing"
            ],
            "selected_object_info": {
                "oid": {
                    "oid": "rbd_data.20c737083e5fdc6e.00000000000dc733",
                    "key": "",
                    "snapid": 16970,
                    "hash": 3945368553,
                    "max": 0,
                    "pool": 36,
                    "namespace": ""
                },
                "version": "326149'4861369",
                "prior_version": "262931'4535183",
                "last_reqid": "osd.987.0:56883287",
                "user_version": 4532671,
                "size": 4194304,
                "mtime": "2019-03-06 16:04:40.619294",
                "local_mtime": "2019-03-06 16:04:40.630542",
                "lost": 0,
                "flags": [
                    "dirty",
                    "data_digest",
                    "omap_digest"
                ],
                "legacy_snaps": [
                    16970
                ],
                "truncate_seq": 0,
                "truncate_size": 0,
                "data_digest": "0x1b5e4a89",
                "omap_digest": "0xffffffff",
                "expected_object_size": 0,
                "expected_write_size": 0,
                "alloc_hint_flags": 0,
                "manifest": {
                    "type": 0,
                    "redirect_target": {
                        "oid": "",
                        "key": "",
                        "snapid": 0,
                        "hash": 0,
                        "max": 0,
                        "pool": -9223372036854775808,
                        "namespace": ""
                    }
                },
                "watchers": {}
            },
            "shards": [
                {
                    "osd": 190,
                    "primary": false,
                    "errors": [],
                    "size": 4194304
                },
                {
                    "osd": 1254,
                    "primary": true,
                    "errors": [
                        "missing"
                    ]
                },
                {
                    "osd": 1317,
                    "primary": false,
                    "errors": [],
                    "size": 4194304
                }
            ]
        },
        {
            "object": {
                "name": "rbd_data.20c737083e5fdc6e.00000000000dc733",
                "nspace": "",
                "locator": "",
                "snap": "head",
                "version": 5283556
            },
            "errors": [
                "object_info_inconsistency",
                "snapset_inconsistency"
            ],
            "union_shard_errors": [],
            "selected_object_info": {
                "oid": {
                    "oid": "rbd_data.20c737083e5fdc6e.00000000000dc733",
                    "key": "",
                    "snapid": -2,
                    "hash": 3945368553,
                    "max": 0,
                    "pool": 36,
                    "namespace": ""
                },
                "version": "381700'5459156",
                "prior_version": "369764'5299802",
                "last_reqid": "osd.1254.0:491362",
                "user_version": 5283556,
                "size": 4194304,
                "mtime": "2019-08-30 11:01:06.681079",
                "local_mtime": "2019-08-30 11:01:06.683473",
                "lost": 0,
                "flags": [
                    "dirty",
                    "data_digest",
                    "omap_digest"
                ],
                "legacy_snaps": [],
                "truncate_seq": 0,
                "truncate_size": 0,
                "data_digest": "0x54ec13a2",
                "omap_digest": "0xffffffff",
                "expected_object_size": 4194304,
                "expected_write_size": 4194304,
                "alloc_hint_flags": 0,
                "manifest": {
                    "type": 0,
                    "redirect_target": {
                        "oid": "",
                        "key": "",
                        "snapid": 0,
                        "hash": 0,
                        "max": 0,
                        "pool": -9223372036854775808,
                        "namespace": ""
                    }
                },
                "watchers": {}
            },
            "shards": [
                {
                    "osd": 190,
                    "primary": false,
                    "errors": [],
                    "size": 4194304,
                    "object_info": {
                        "oid": {
                            "oid": "rbd_data.20c737083e5fdc6e.00000000000dc733",
                            "key": "",
                            "snapid": -2,
                            "hash": 3945368553,
                            "max": 0,
                            "pool": 36,
                            "namespace": ""
                        },
                        "version": "369764'5299802",
                        "prior_version": "369764'5299801",
                        "last_reqid": "osd.1254.0:491362",
                        "user_version": 5283556,
                        "size": 4194304,
                        "mtime": "2019-08-30 11:01:06.681079",
                        "local_mtime": "2019-08-30 11:01:06.683473",
                        "lost": 0,
                        "flags": [
                            "dirty",
                            "data_digest",
                            "omap_digest"
                        ],
                        "legacy_snaps": [],
                        "truncate_seq": 0,
                        "truncate_size": 0,
                        "data_digest": "0x54ec13a2",
                        "omap_digest": "0xffffffff",
                        "expected_object_size": 4194304,
                        "expected_write_size": 4194304,
                        "alloc_hint_flags": 0,
                        "manifest": {
                            "type": 0,
                            "redirect_target": {
                                "oid": "",
                                "key": "",
                                "snapid": 0,
                                "hash": 0,
                                "max": 0,
                                "pool": -9223372036854775808,
                                "namespace": ""
                            }
                        },
                        "watchers": {}
                    },
                    "snapset": {
                        "snap_context": {
                            "seq": 16970,
                            "snaps": [
                                16970
                            ]
                        },
                        "head_exists": 1,
                        "clones": [
                            {
                                "snap": 16970,
                                "size": 4194304,
                                "overlap": "[1048576~327680]",
                                "snaps": [
                                    16970
                                ]
                            }
                        ]
                    }
                },
                {
                    "osd": 1254,
                    "primary": true,
                    "errors": [],
                    "size": 4194304,
                    "object_info": {
                        "oid": {
                            "oid": "rbd_data.20c737083e5fdc6e.00000000000dc733",
                            "key": "",
                            "snapid": -2,
                            "hash": 3945368553,
                            "max": 0,
                            "pool": 36,
                            "namespace": ""
                        },
                        "version": "381700'5459156",
                        "prior_version": "369764'5299802",
                        "last_reqid": "osd.1254.0:491362",
                        "user_version": 5283556,
                        "size": 4194304,
                        "mtime": "2019-08-30 11:01:06.681079",
                        "local_mtime": "2019-08-30 11:01:06.683473",
                        "lost": 0,
                        "flags": [
                            "dirty",
                            "data_digest",
                            "omap_digest"
                        ],
                        "legacy_snaps": [],
                        "truncate_seq": 0,
                        "truncate_size": 0,
                        "data_digest": "0x54ec13a2",
                        "omap_digest": "0xffffffff",
                        "expected_object_size": 4194304,
                        "expected_write_size": 4194304,
                        "alloc_hint_flags": 0,
                        "manifest": {
                            "type": 0,
                            "redirect_target": {
                                "oid": "",
                                "key": "",
                                "snapid": 0,
                                "hash": 0,
                                "max": 0,
                                "pool": -9223372036854775808,
                                "namespace": ""
                            }
                        },
                        "watchers": {}
                    },
                    "snapset": {
                        "snap_context": {
                            "seq": 16970,
                            "snaps": []
                        },
                        "head_exists": 1,
                        "clones": []
                    }
                },
                {
                    "osd": 1317,
                    "primary": false,
                    "errors": [],
                    "size": 4194304,
                    "object_info": {
                        "oid": {
                            "oid": "rbd_data.20c737083e5fdc6e.00000000000dc733",
                            "key": "",
                            "snapid": -2,
                            "hash": 3945368553,
                            "max": 0,
                            "pool": 36,
                            "namespace": ""
                        },
                        "version": "369764'5299802",
                        "prior_version": "369764'5299801",
                        "last_reqid": "osd.1254.0:491362",
                        "user_version": 5283556,
                        "size": 4194304,
                        "mtime": "2019-08-30 11:01:06.681079",
                        "local_mtime": "2019-08-30 11:01:06.683473",
                        "lost": 0,
                        "flags": [
                            "dirty",
                            "data_digest",
                            "omap_digest"
                        ],
                        "legacy_snaps": [],
                        "truncate_seq": 0,
                        "truncate_size": 0,
                        "data_digest": "0x54ec13a2",
                        "omap_digest": "0xffffffff",
                        "expected_object_size": 4194304,
                        "expected_write_size": 4194304,
                        "alloc_hint_flags": 0,
                        "manifest": {
                            "type": 0,
                            "redirect_target": {
                                "oid": "",
                                "key": "",
                                "snapid": 0,
                                "hash": 0,
                                "max": 0,
                                "pool": -9223372036854775808,
                                "namespace": ""
                            }
                        },
                        "watchers": {}
                    },
                    "snapset": {
                        "snap_context": {
                            "seq": 16970,
                            "snaps": [
                                16970
                            ]
                        },
                        "head_exists": 1,
                        "clones": [
                            {
                                "snap": 16970,
                                "size": 4194304,
                                "overlap": "[1048576~327680]",
                                "snaps": [
                                    16970
                                ]
                            }
                        ]
                    }
                }
            ]
        }
    ]
}
{
    "epoch": 381675,
    "inconsistents": [
        {
            "object": {
                "name": "rbd_data.20c737083e5fdc6e.0000000000014376",
                "nspace": "",
                "locator": "",
                "snap": 16970,
                "version": 4967730
            },
            "errors": [],
            "union_shard_errors": [
                "missing"
            ],
            "selected_object_info": {
                "oid": {
                    "oid": "rbd_data.20c737083e5fdc6e.0000000000014376",
                    "key": "",
                    "snapid": 16970,
                    "hash": 633050641,
                    "max": 0,
                    "pool": 36,
                    "namespace": ""
                },
                "version": "374722'6800514",
                "prior_version": "189139'4972773",
                "last_reqid": "osd.566.0:17126097",
                "user_version": 4967730,
                "size": 4194304,
                "mtime": "2018-07-16 19:04:04.504694",
                "local_mtime": "2018-07-16 19:04:04.507996",
                "lost": 0,
                "flags": [
                    "dirty",
                    "data_digest",
                    "omap_digest"
                ],
                "legacy_snaps": [],
                "truncate_seq": 0,
                "truncate_size": 0,
                "data_digest": "0xba655f8a",
                "omap_digest": "0xffffffff",
                "expected_object_size": 0,
                "expected_write_size": 0,
                "alloc_hint_flags": 0,
                "manifest": {
                    "type": 0,
                    "redirect_target": {
                        "oid": "",
                        "key": "",
                        "snapid": 0,
                        "hash": 0,
                        "max": 0,
                        "pool": -9223372036854775808,
                        "namespace": ""
                    }
                },
                "watchers": {}
            },
            "shards": [
                {
                    "osd": 566,
                    "primary": true,
                    "errors": [
                        "missing"
                    ]
                },
                {
                    "osd": 575,
                    "primary": false,
                    "errors": [],
                    "size": 4194304
                },
                {
                    "osd": 1285,
                    "primary": false,
                    "errors": [],
                    "size": 4194304
                }
            ]
        },
        {
            "object": {
                "name": "rbd_data.20c737083e5fdc6e.0000000000014376",
                "nspace": "",
                "locator": "",
                "snap": "head",
                "version": 6800517
            },
            "errors": [
                "object_info_inconsistency",
                "snapset_inconsistency"
            ],
            "union_shard_errors": [],
            "selected_object_info": {
                "oid": {
                    "oid": "rbd_data.20c737083e5fdc6e.0000000000014376",
                    "key": "",
                    "snapid": -2,
                    "hash": 633050641,
                    "max": 0,
                    "pool": 36,
                    "namespace": ""
                },
                "version": "381672'6869082",
                "prior_version": "375620'6805877",
                "last_reqid": "osd.566.0:417488",
                "user_version": 6800517,
                "size": 4194304,
                "mtime": "2019-09-04 20:11:33.677490",
                "local_mtime": "2019-09-04 20:11:33.682616",
                "lost": 0,
                "flags": [
                    "dirty",
                    "data_digest",
                    "omap_digest"
                ],
                "legacy_snaps": [],
                "truncate_seq": 0,
                "truncate_size": 0,
                "data_digest": "0x42796279",
                "omap_digest": "0xffffffff",
                "expected_object_size": 4194304,
                "expected_write_size": 4194304,
                "alloc_hint_flags": 0,
                "manifest": {
                    "type": 0,
                    "redirect_target": {
                        "oid": "",
                        "key": "",
                        "snapid": 0,
                        "hash": 0,
                        "max": 0,
                        "pool": -9223372036854775808,
                        "namespace": ""
                    }
                },
                "watchers": {}
            },
            "shards": [
                {
                    "osd": 566,
                    "primary": true,
                    "errors": [],
                    "size": 4194304,
                    "object_info": {
                        "oid": {
                            "oid": "rbd_data.20c737083e5fdc6e.0000000000014376",
                            "key": "",
                            "snapid": -2,
                            "hash": 633050641,
                            "max": 0,
                            "pool": 36,
                            "namespace": ""
                        },
                        "version": "381672'6869082",
                        "prior_version": "375620'6805877",
                        "last_reqid": "osd.566.0:417488",
                        "user_version": 6800517,
                        "size": 4194304,
                        "mtime": "2019-09-04 20:11:33.677490",
                        "local_mtime": "2019-09-04 20:11:33.682616",
                        "lost": 0,
                        "flags": [
                            "dirty",
                            "data_digest",
                            "omap_digest"
                        ],
                        "legacy_snaps": [],
                        "truncate_seq": 0,
                        "truncate_size": 0,
                        "data_digest": "0x42796279",
                        "omap_digest": "0xffffffff",
                        "expected_object_size": 4194304,
                        "expected_write_size": 4194304,
                        "alloc_hint_flags": 0,
                        "manifest": {
                            "type": 0,
                            "redirect_target": {
                                "oid": "",
                                "key": "",
                                "snapid": 0,
                                "hash": 0,
                                "max": 0,
                                "pool": -9223372036854775808,
                                "namespace": ""
                            }
                        },
                        "watchers": {}
                    },
                    "snapset": {
                        "snap_context": {
                            "seq": 16970,
                            "snaps": []
                        },
                        "head_exists": 1,
                        "clones": []
                    }
                },
                {
                    "osd": 575,
                    "primary": false,
                    "errors": [],
                    "size": 4194304,
                    "object_info": {
                        "oid": {
                            "oid": "rbd_data.20c737083e5fdc6e.0000000000014376",
                            "key": "",
                            "snapid": -2,
                            "hash": 633050641,
                            "max": 0,
                            "pool": 36,
                            "namespace": ""
                        },
                        "version": "375620'6805877",
                        "prior_version": "374722'6800517",
                        "last_reqid": "osd.566.0:417488",
                        "user_version": 6800517,
                        "size": 4194304,
                        "mtime": "2019-09-04 20:11:33.677490",
                        "local_mtime": "2019-09-04 20:11:33.682616",
                        "lost": 0,
                        "flags": [
                            "dirty",
                            "data_digest",
                            "omap_digest"
                        ],
                        "legacy_snaps": [],
                        "truncate_seq": 0,
                        "truncate_size": 0,
                        "data_digest": "0x42796279",
                        "omap_digest": "0xffffffff",
                        "expected_object_size": 4194304,
                        "expected_write_size": 4194304,
                        "alloc_hint_flags": 0,
                        "manifest": {
                            "type": 0,
                            "redirect_target": {
                                "oid": "",
                                "key": "",
                                "snapid": 0,
                                "hash": 0,
                                "max": 0,
                                "pool": -9223372036854775808,
                                "namespace": ""
                            }
                        },
                        "watchers": {}
                    },
                    "snapset": {
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                            "seq": 16970,
                            "snaps": [
                                16970
                            ]
                        },
                        "head_exists": 1,
                        "clones": [
                            {
                                "snap": 16970,
                                "size": 4194304,
                                "overlap": "[1048576~3145728]",
                                "snaps": [
                                    16970
                                ]
                            }
                        ]
                    }
                },
                {
                    "osd": 1285,
                    "primary": false,
                    "errors": [],
                    "size": 4194304,
                    "object_info": {
                        "oid": {
                            "oid": "rbd_data.20c737083e5fdc6e.0000000000014376",
                            "key": "",
                            "snapid": -2,
                            "hash": 633050641,
                            "max": 0,
                            "pool": 36,
                            "namespace": ""
                        },
                        "version": "375620'6805877",
                        "prior_version": "374722'6800517",
                        "last_reqid": "osd.566.0:417488",
                        "user_version": 6800517,
                        "size": 4194304,
                        "mtime": "2019-09-04 20:11:33.677490",
                        "local_mtime": "2019-09-04 20:11:33.682616",
                        "lost": 0,
                        "flags": [
                            "dirty",
                            "data_digest",
                            "omap_digest"
                        ],
                        "legacy_snaps": [],
                        "truncate_seq": 0,
                        "truncate_size": 0,
                        "data_digest": "0x42796279",
                        "omap_digest": "0xffffffff",
                        "expected_object_size": 4194304,
                        "expected_write_size": 4194304,
                        "alloc_hint_flags": 0,
                        "manifest": {
                            "type": 0,
                            "redirect_target": {
                                "oid": "",
                                "key": "",
                                "snapid": 0,
                                "hash": 0,
                                "max": 0,
                                "pool": -9223372036854775808,
                                "namespace": ""
                            }
                        },
                        "watchers": {}
                    },
                    "snapset": {
                        "snap_context": {
                            "seq": 16970,
                            "snaps": [
                                16970
                            ]
                        },
                        "head_exists": 1,
                        "clones": [
                            {
                                "snap": 16970,
                                "size": 4194304,
                                "overlap": "[1048576~3145728]",
                                "snaps": [
                                    16970
                                ]
                            }
                        ]
                    }
                }
            ]
        }
    ]
}
{
    "epoch": 381666,
    "inconsistents": [
        {
            "object": {
                "name": "rbd_data.20c737083e5fdc6e.00000000000d1cf4",
                "nspace": "",
                "locator": "",
                "snap": 16970,
                "version": 5534061
            },
            "errors": [],
            "union_shard_errors": [
                "missing"
            ],
            "selected_object_info": {
                "oid": {
                    "oid": "rbd_data.20c737083e5fdc6e.00000000000d1cf4",
                    "key": "",
                    "snapid": 16970,
                    "hash": 20194156,
                    "max": 0,
                    "pool": 36,
                    "namespace": ""
                },
                "version": "359776'6893919",
                "prior_version": "256671'5539617",
                "last_reqid": "osd.912.0:39602580",
                "user_version": 5534061,
                "size": 4194304,
                "mtime": "2019-02-18 09:31:12.202842",
                "local_mtime": "2019-02-18 09:31:12.210501",
                "lost": 0,
                "flags": [
                    "dirty",
                    "data_digest",
                    "omap_digest"
                ],
                "legacy_snaps": [
                    16970
                ],
                "truncate_seq": 0,
                "truncate_size": 0,
                "data_digest": "0x8bb2310d",
                "omap_digest": "0xffffffff",
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                        "namespace": ""
                    }
                },
                "watchers": {}
            },
            "shards": [
                {
                    "osd": 384,
                    "primary": false,
                    "errors": [],
                    "size": 4194304,
                    "omap_digest": "0xffffffff",
                    "data_digest": "0x8bb2310d"
                },
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