Re: HDD OSD 100% busy reading OMAP keys RGW

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On 2/14/19 11:26 AM, Dan van der Ster wrote:
> On Thu, Feb 14, 2019 at 11:13 AM Wido den Hollander <wido@xxxxxxxx> wrote:
>>
>> On 2/14/19 10:20 AM, Dan van der Ster wrote:
>>> On Thu., Feb. 14, 2019, 6:17 a.m. Wido den Hollander <wido@xxxxxxxx wrote:
>>>>
>>>> Hi,
>>>>
>>>> On a cluster running RGW only I'm running into BlueStore 12.2.11 OSDs
>>>> being 100% busy sometimes.
>>>>
>>>> This cluster has 85k stale indexes (stale-instances list) and I've been
>>>> slowly trying to remove them.
>>>>
>>>
>>> Is your implication here that 'stale-instances rm' isn't going to work
>>> for your case?
>>>
>>
>> No, just saying that I've been running it to remove stale indexes. But
>> suddenly the OSDs are spiking to 100% busy when reading from BlueFS.
> 
> How do you "slowly" rm the stale-instances? If you called
> stale-instances rm, doesn't that mean there's some rgw in your cluster
> busily now trying to delete 85k indices? I imagine that could be
> triggering this load spike.

I ran it with:

$ timeout 900 <command>

Just to see what would happen.

The problem is that even without this running I now see OSDs spiking too
100% busy.

The bluefs debug logs tell me that when a particular object is queried
it will cause the OSD to scan it's RocksDB database and render the OSD
useless for a few minutes.

> (I'm trying to grok the stale-instances rm implementation -- it seems
> to do the work 1000 keys at a time, but will nevertheless queue up the
> work to rm all indices from one call to the command <--- please
> correct me if I'm wrong).
> 
> -- dan
> 
> 
>>
>>> (We haven't updated to 12.2.11 yet but have a similar number of stale
>>> instances to remove).
>>>
>>
>> In this case the index pool already went from 222k objects to 186k and
>> is still going down if we run the GC.
>>
>>> For the rest below, I didn't understand *when* are the osd's getting
>>> 100% busy -- is that just during normal operations (after the 12.2.11
>>> upgrade) or is it while listing the indexes?
>>>
>>
>> Not sure either. For certain Objects this can be triggered by just
>> listing the OMAP keys. This OSD eats all I/O at that moment.
>>
>>> Also, have you already tried compacting the omap on the relevant osds?
>>>
>>
>> I tried that, but on a offline OSD I cancelled it after 25 minutes as it
>> was still running.
>>
>> Not sure yet why this happens on those OSDs.
>>
>> Wido
>>
>>> -- Dan
>>>
>>>
>>>>
>>>>
>>>> I noticed that regularly OSDs read their HDD heavily and that device
>>>> then becomes 100% busy. (iostat)
>>>>
>>>> $ radosgw-admin reshard stale-instances list > stale.json
>>>> $ cat stale.json|jq -r '.[]'|wc -l
>>>>
>>>> I increased debug_bluefs and debug_bluestore to 10 and I found:
>>>>
>>>> 2019-02-14 05:11:18.417097 7f627732d700 10
>>>> bluestore(/var/lib/ceph/osd/ceph-266) omap_get_header 13.205_head oid
>>>> #13:a05231a1:::.dir.ams02.36062237.821.79:head# = 0
>>>> 2019-02-14 05:11:18.417127 7f627732d700 10
>>>> bluestore(/var/lib/ceph/osd/ceph-266) get_omap_iterator 13.205_head
>>>> #13:a05231a1:::.dir.ams02.36062237.821.79:head#
>>>> 2019-02-14 05:11:18.417133 7f627732d700 10
>>>> bluestore(/var/lib/ceph/osd/ceph-266) get_omap_iterator has_omap = 1
>>>>
>>>> 2019-02-14 05:11:18.417169 7f627732d700 10 bluefs _read_random h
>>>> 0x560cb77c5080 0x17a8cd0~fba from file(ino 71562 size 0x2d96a43 mtime
>>>> 2019-02-14 02:52:16.370746 bdev 1 allocated 2e00000 extents
>>>> [1:0x3228f00000+2e00000])
>>>> 2019-02-14 05:11:23.129645 7f627732d700 10 bluefs _read_random h
>>>> 0x560c14167780 0x17bb6b7~f52 from file(ino 68900 size 0x41919ef mtime
>>>> 2019-02-01 01:19:59.216218 bdev 1 allocated 4200000 extents
>>>> [1:0x8b31a00000+200000,1:0x8b31e00000+e00000,1:0x8b32d00000+1700000,1:0x8b3ce00000+1b00000])
>>>> 2019-02-14 05:11:23.144550 7f627732d700 10 bluefs _read_random h
>>>> 0x560c14c86b80 0x96d020~ef3 from file(ino 67189 size 0x419b603 mtime
>>>> 2019-02-01 00:45:12.743836 bdev 1 allocated 4200000 extents
>>>> [1:0x53da9a00000+4200000])
>>>>
>>>> 2019-02-14 05:11:23.149958 7f627732d700 10
>>>> bluestore(/var/lib/ceph/osd/ceph-266) omap_get_header 13.e8_head oid
>>>> #13:171bcbd3:::.dir.ams02.39023047.682.114:head# = 0
>>>> 2019-02-14 05:11:23.149975 7f627732d700 10
>>>> bluestore(/var/lib/ceph/osd/ceph-266) get_omap_iterator 13.e8_head
>>>> #13:171bcbd3:::.dir.ams02.39023047.682.114:head#
>>>> 2019-02-14 05:11:23.149981 7f627732d700 10
>>>> bluestore(/var/lib/ceph/osd/ceph-266) get_omap_iterator has_omap = 1
>>>>
>>>> 2019-02-14 05:11:23.150012 7f627732d700 10 bluefs _read_random h
>>>> 0x560c14e42500 0x1a18670~ff0 from file(ino 71519 size 0x417a60f mtime
>>>> 2019-02-14 02:51:35.125629 bdev 1 allocated 4200000 extents
>>>> [1:0x1c30d00000+4200000])
>>>> 2019-02-14 05:11:23.155679 7f627732d700 10 bluefs _read_random h
>>>> 0x560c1c1ab980 0xedad4c~fde from file(ino 71391 size 0x25d4a89 mtime
>>>> 2019-02-13 22:25:22.801676 bdev 1 allocated 2600000 extents
>>>> [1:0x38b00000+2600000])
>>>> 2019-02-14 05:11:23.158995 7f627732d700 10 bluefs _read_random h
>>>> 0x560c1c1ab980 0xedbd2a~fba from file(ino 71391 size 0x25d4a89 mtime
>>>> 2019-02-13 22:25:22.801676 bdev 1 allocated 2600000 extents
>>>> [1:0x38b00000+2600000])
>>>> 2019-02-14 05:11:23.159233 7f627732d700 10 bluefs _read_random h
>>>> 0x560c14c86b80 0x96df13~fca from file(ino 67189 size 0x419b603 mtime
>>>> 2019-02-01 00:45:12.743836 bdev 1 allocated 4200000 extents
>>>> [1:0x53da9a00000+4200000])
>>>> 2019-02-14 05:11:23.159456 7f627732d700 10 bluefs _read_random h
>>>> 0x560c14c86b80 0x96eedd~f1b from file(ino 67189 size 0x419b603 mtime
>>>> 2019-02-01 00:45:12.743836 bdev 1 allocated 4200000 extents
>>>> [1:0x53da9a00000+4200000])
>>>> 2019-02-14 05:11:23.159639 7f627732d700 10 bluefs _read_random h
>>>> 0x560c14c86b80 0x96fdf8~eba from file(ino 67189 size 0x419b603 mtime
>>>> 2019-02-01 00:45:12.743836 bdev 1 allocated 4200000 extents
>>>> [1:0x53da9a00000+4200000])
>>>>
>>>> After this the _random_read just continues for thousands of lines and
>>>> the OSD becomes very slow. Slow requests, heartbeat timeouts and even
>>>> OSDs being marked as down.
>>>>
>>>> So I tried to list the omap keys:
>>>>
>>>> $ rados -p .rgw.buckets.index listomapkeys .dir.ams02.36062237.821.79
>>>> $ rados -p .rgw.buckets.index listomapkeys .dir.ams02.39023047.682.114
>>>>
>>>> .dir.ams02.36062237.821.79: <1s
>>>> .dir.ams02.39023047.682.114: ~30s
>>>>
>>>> Both objects are on the same OSD (266), but if I list the omapkeys for
>>>> the last Object the disk jumps to 100% busy and stays there for ~1min.
>>>>
>>>> I've seen this before with RBD and SSD-backed OSDs where on a omap key
>>>> list the disks would jump to 100% busy and cause slow requests.
>>>>
>>>> This case seems very similar to that one.
>>>>
>>>> I can keep triggering it in this case by listing the omap keys for
>>>> object .dir.ams02.39023047.682.114, which doesn't have any keys though.
>>>>
>>>> Has anybody seen this before?
>>>>
>>>> Some information:
>>>>
>>>> - Ceph 12.2.11
>>>> - BlueStore (default memory target of 4G)
>>>> - RGW-only use-case
>>>> - WAL+DB+DATA on HDD
>>>>
>>>> Thanks,
>>>>
>>>> Wido
>>>>
>>>> _______________________________________________
>>>> ceph-users mailing list
>>>> ceph-users@xxxxxxxxxxxxxx
>>>> http://lists.ceph.com/listinfo.cgi/ceph-users-ceph.com
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