Re: ceph all-nvme mysql performance tuning

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Hi Maged,

Thanks a lot for the response. We try with different number of threads and we're getting almost the same kind of difference between the storage types. Going to try with different rbd stripe size, object size values and see if we get more competitive numbers. Will get back with more tests and param changes to see if we get better :)

Thanks,

Best,

German

2017-11-27 11:36 GMT-03:00 Maged Mokhtar <mmokhtar@xxxxxxxxxxx>:

On 2017-11-27 15:02, German Anders wrote:

Hi All,
 
I've a performance question, we recently install a brand new Ceph cluster with all-nvme disks, using ceph version 12.2.0 with bluestore configured. The back-end of the cluster is using a bond IPoIB (active/passive) , and for the front-end we are using a bonding config with active/active (20GbE) to communicate with the clients.
 
The cluster configuration is the following:
 
MON Nodes:
OS: Ubuntu 16.04.3 LTS | kernel 4.12.14 
3x 1U servers:
  2x Intel Xeon E5-2630v4 @2.2Ghz
  128G RAM
  2x Intel SSD DC S3520 150G (in RAID-1 for OS)
  2x 82599ES 10-Gigabit SFI/SFP+ Network Connection
 
OSD Nodes:
OS: Ubuntu 16.04.3 LTS | kernel 4.12.14
4x 2U servers:
  2x Intel Xeon E5-2640v4 @2.4Ghz
  128G RAM
  2x Intel SSD DC S3520 150G (in RAID-1 for OS)
  1x Ethernet Controller 10G X550T
  1x 82599ES 10-Gigabit SFI/SFP+ Network Connection
  12x Intel SSD DC P3520 1.2T (NVMe) for OSD daemons
  1x Mellanox ConnectX-3 InfiniBand FDR 56Gb/s Adapter (dual port)
 
 
Here's the tree:
 
ID CLASS WEIGHT   TYPE NAME          STATUS REWEIGHT PRI-AFF
-7       48.00000 root root
-5       24.00000     rack rack1
-1       12.00000         node cpn01
 0  nvme  1.00000             osd.0      up  1.00000 1.00000
 1  nvme  1.00000             osd.1      up  1.00000 1.00000
 2  nvme  1.00000             osd.2      up  1.00000 1.00000
 3  nvme  1.00000             osd.3      up  1.00000 1.00000
 4  nvme  1.00000             osd.4      up  1.00000 1.00000
 5  nvme  1.00000             osd.5      up  1.00000 1.00000
 6  nvme  1.00000             osd.6      up  1.00000 1.00000
 7  nvme  1.00000             osd.7      up  1.00000 1.00000
 8  nvme  1.00000             osd.8      up  1.00000 1.00000
 9  nvme  1.00000             osd.9      up  1.00000 1.00000
10  nvme  1.00000             osd.10     up  1.00000 1.00000
11  nvme  1.00000             osd.11     up  1.00000 1.00000
-3       12.00000         node cpn03
24  nvme  1.00000             osd.24     up  1.00000 1.00000
25  nvme  1.00000             osd.25     up  1.00000 1.00000
26  nvme  1.00000             osd.26     up  1.00000 1.00000
27  nvme  1.00000             osd.27     up  1.00000 1.00000
28  nvme  1.00000             osd.28     up  1.00000 1.00000
29  nvme  1.00000             osd.29     up  1.00000 1.00000
30  nvme  1.00000             osd.30     up  1.00000 1.00000
31  nvme  1.00000             osd.31     up  1.00000 1.00000
32  nvme  1.00000             osd.32     up  1.00000 1.00000
33  nvme  1.00000             osd.33     up  1.00000 1.00000
34  nvme  1.00000             osd.34     up  1.00000 1.00000
35  nvme  1.00000             osd.35     up  1.00000 1.00000
-6       24.00000     rack rack2
-2       12.00000         node cpn02
12  nvme  1.00000             osd.12     up  1.00000 1.00000
13  nvme  1.00000             osd.13     up  1.00000 1.00000
14  nvme  1.00000             osd.14     up  1.00000 1.00000
15  nvme  1.00000             osd.15     up  1.00000 1.00000
16  nvme  1.00000             osd.16     up  1.00000 1.00000
17  nvme  1.00000             osd.17     up  1.00000 1.00000
18  nvme  1.00000             osd.18     up  1.00000 1.00000
19  nvme  1.00000             osd.19     up  1.00000 1.00000
20  nvme  1.00000             osd.20     up  1.00000 1.00000
21  nvme  1.00000             osd.21     up  1.00000 1.00000
22  nvme  1.00000             osd.22     up  1.00000 1.00000
23  nvme  1.00000             osd.23     up  1.00000 1.00000
-4       12.00000         node cpn04
36  nvme  1.00000             osd.36     up  1.00000 1.00000
37  nvme  1.00000             osd.37     up  1.00000 1.00000
38  nvme  1.00000             osd.38     up  1.00000 1.00000
39  nvme  1.00000             osd.39     up  1.00000 1.00000
40  nvme  1.00000             osd.40     up  1.00000 1.00000
41  nvme  1.00000             osd.41     up  1.00000 1.00000
42  nvme  1.00000             osd.42     up  1.00000 1.00000
43  nvme  1.00000             osd.43     up  1.00000 1.00000
44  nvme  1.00000             osd.44     up  1.00000 1.00000
45  nvme  1.00000             osd.45     up  1.00000 1.00000
46  nvme  1.00000             osd.46     up  1.00000 1.00000
47  nvme  1.00000             osd.47     up  1.00000 1.00000
 
The disk partition of one of the OSD nodes:
 
NAME                   MAJ:MIN RM   SIZE RO TYPE  MOUNTPOINT
nvme6n1                259:1    0   1.1T  0 disk
├─nvme6n1p2            259:15   0   1.1T  0 part
└─nvme6n1p1            259:13   0   100M  0 part  /var/lib/ceph/osd/ceph-6
nvme9n1                259:0    0   1.1T  0 disk
├─nvme9n1p2            259:8    0   1.1T  0 part
└─nvme9n1p1            259:7    0   100M  0 part  /var/lib/ceph/osd/ceph-9
sdb                      8:16   0 139.8G  0 disk
└─sdb1                   8:17   0 139.8G  0 part
  └─md0                  9:0    0 139.6G  0 raid1
    ├─md0p2            259:31   0     1K  0 md
    ├─md0p5            259:32   0 139.1G  0 md
    │ ├─cpn01--vg-swap 253:1    0  27.4G  0 lvm   [SWAP]
    │ └─cpn01--vg-root 253:0    0 111.8G  0 lvm   /
    └─md0p1            259:30   0 486.3M  0 md    /boot
nvme11n1               259:2    0   1.1T  0 disk
├─nvme11n1p1           259:12   0   100M  0 part  /var/lib/ceph/osd/ceph-11
└─nvme11n1p2           259:14   0   1.1T  0 part
nvme2n1                259:6    0   1.1T  0 disk
├─nvme2n1p2            259:21   0   1.1T  0 part
└─nvme2n1p1            259:20   0   100M  0 part  /var/lib/ceph/osd/ceph-2
nvme5n1                259:3    0   1.1T  0 disk
├─nvme5n1p1            259:9    0   100M  0 part  /var/lib/ceph/osd/ceph-5
└─nvme5n1p2            259:10   0   1.1T  0 part
nvme8n1                259:24   0   1.1T  0 disk
├─nvme8n1p1            259:26   0   100M  0 part  /var/lib/ceph/osd/ceph-8
└─nvme8n1p2            259:28   0   1.1T  0 part
nvme10n1               259:11   0   1.1T  0 disk
├─nvme10n1p1           259:22   0   100M  0 part  /var/lib/ceph/osd/ceph-10
└─nvme10n1p2           259:23   0   1.1T  0 part
nvme1n1                259:33   0   1.1T  0 disk
├─nvme1n1p1            259:34   0   100M  0 part  /var/lib/ceph/osd/ceph-1
└─nvme1n1p2            259:35   0   1.1T  0 part
nvme4n1                259:5    0   1.1T  0 disk
├─nvme4n1p1            259:18   0   100M  0 part  /var/lib/ceph/osd/ceph-4
└─nvme4n1p2            259:19   0   1.1T  0 part
nvme7n1                259:25   0   1.1T  0 disk
├─nvme7n1p1            259:27   0   100M  0 part  /var/lib/ceph/osd/ceph-7
└─nvme7n1p2            259:29   0   1.1T  0 part
sda                      8:0    0 139.8G  0 disk
└─sda1                   8:1    0 139.8G  0 part
  └─md0                  9:0    0 139.6G  0 raid1
    ├─md0p2            259:31   0     1K  0 md
    ├─md0p5            259:32   0 139.1G  0 md
    │ ├─cpn01--vg-swap 253:1    0  27.4G  0 lvm   [SWAP]
    │ └─cpn01--vg-root 253:0    0 111.8G  0 lvm   /
    └─md0p1            259:30   0 486.3M  0 md    /boot
nvme0n1                259:36   0   1.1T  0 disk
├─nvme0n1p1            259:37   0   100M  0 part  /var/lib/ceph/osd/ceph-0
└─nvme0n1p2            259:38   0   1.1T  0 part
nvme3n1                259:4    0   1.1T  0 disk
├─nvme3n1p1            259:16   0   100M  0 part  /var/lib/ceph/osd/ceph-3
└─nvme3n1p2            259:17   0   1.1T  0 part
 
 
For the disk scheduler we're using [kyber], for the read_ahead_kb we try different values (0,128 and 2048), the rq_affinity set to 2, and the rotational parameter set to 0.
We've also set the CPU governor to performance on all the cores, and tune some sysctl parameters also:
 
# for Ceph
net.ipv4.ip_forward=0
net.ipv4.conf.default.rp_filter=1
kernel.sysrq=0
kernel.core_uses_pid=1
net.ipv4.tcp_syncookies=0
#net.netfilter.nf_conntrack_max=2621440
#net.netfilter.nf_conntrack_tcp_timeout_established = 1800
# disable netfilter on bridges
#net.bridge.bridge-nf-call-ip6tables = 0
#net.bridge.bridge-nf-call-iptables = 0
#net.bridge.bridge-nf-call-arptables = 0
vm.min_free_kbytes=1000000
 
# Controls the maximum size of a message, in bytes
kernel.msgmnb = 65536
 
# Controls the default maxmimum size of a mesage queue
kernel.msgmax = 65536
 
# Controls the maximum shared segment size, in bytes
kernel.shmmax = 68719476736
 
# Controls the maximum number of shared memory segments, in pages
kernel.shmall = 4294967296
 
 
The ceph.conf file is:
 
...
osd_pool_default_size = 3
osd_pool_default_min_size = 2
osd_pool_default_pg_num = 1600
osd_pool_default_pgp_num = 1600
 
debug_crush = 1/1
debug_buffer = 0/1
debug_timer = 0/0
debug_filer = 0/1
debug_objecter = 0/1
debug_rados = 0/5
debug_rbd = 0/5
debug_ms = 0/5
debug_throttle = 1/1
 
debug_journaler = 0/0
debug_objectcatcher = 0/0
debug_client = 0/0
debug_osd = 0/0
debug_optracker = 0/0
debug_objclass = 0/0
debug_journal = 0/0
debug_filestore = 0/0
debug_mon = 0/0
debug_paxos = 0/0
 
osd_crush_chooseleaf_type = 0
filestore_xattr_use_omap = true
 
rbd_cache = true
mon_compact_on_trim = false
 
[osd]
osd_crush_update_on_start = false
 
[client]
rbd_cache = true
rbd_cache_writethrough_until_flush = true
rbd_default_features = 1
admin_socket = /var/run/ceph/$cluster-$type.$id.$pid.$cctid.asok
log_file = /var/log/ceph/
 
 
The cluster has two production pools on for openstack (volumes) with RF of 3 and another pool for db (db) with RF of 2. The DBA team has perform several tests with a volume mounted on the DB server (with RBD). The DB server has the following configuration:
 
OS: CentOS 6.9 | kernel 4.14.1
DB: MySQL
ProLiant BL685c G7
4x AMD Opteron Processor 6376 (total of 64 cores)
128G RAM
1x OneConnect 10Gb NIC (quad-port) - in a bond configuration (active/active) with 3 vlans
 
 
 
We also did some tests with sysbench on different storage types:
 
sysbench
disk tps qps latency (ms) 95th percentile
Local SSD 261,28 5.225,61 5,18
Ceph NVMe 95,18 1.903,53 12,3
Pure Storage 196,49 3.929,71 6,32
NetApp FAS 189,83 3.796,59 6,67
EMC VMAX 196,14 3.922,82 6,32
 
 
Is there any specific tuning that I can apply to the ceph cluster, in order to improve those numbers? Or are those numbers ok for the type and size of the cluster that we have? Any advice would be really appreciated.
 
Thanks,
 
 
 
German
 

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Hi,

What is the value of --num-threads (def value is 1) ? Ceph will be better with more threads: 32 or 64.
What is the value of --file-block-size (def 16k) and file-test-mode ? If you are using sequential seqwr/seqrd you will be hitting the same OSD, so maybe try random (rndrd/rndwr) or better use rbd stripe size of 16kb (default rbd stripe is 4M). rbd striping is ideal for small block sequential io pattern typical in databases.

/Maged


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