Re: radosgw: scrub causing slow requests in the md log

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Hi Casey,

I managed to trim up all shards except for that big #54. The others
all trimmed within a few seconds.

But 54 is proving difficult. It's still going after several days, and
now I see that the 1000-key trim is indeed causing osd timeouts. I've
manually compacted the relevant osd leveldbs, but haven't found any
way to speed up the trimming. It's now going at ~1-2Hz, so 1000 trims
per op locks things up for quite awhile.

I'm thinking of running those ceph-osd's with this patch:

# git diff
diff --git a/src/cls/log/cls_log.cc b/src/cls/log/cls_log.cc
index 89745bb..7dcd933 100644
--- a/src/cls/log/cls_log.cc
+++ b/src/cls/log/cls_log.cc
@@ -254,7 +254,7 @@ static int cls_log_trim(cls_method_context_t hctx,
bufferlist *in, bufferlist *o
     to_index = op.to_marker;
   }

-#define MAX_TRIM_ENTRIES 1000
+#define MAX_TRIM_ENTRIES 10
   size_t max_entries = MAX_TRIM_ENTRIES;

   int rc = cls_cxx_map_get_vals(hctx, from_index, log_index_prefix,
max_entries, &keys);


What do you think?

-- Dan




On Mon, Jun 19, 2017 at 5:32 PM, Casey Bodley <cbodley@xxxxxxxxxx> wrote:
> Hi Dan,
>
> That's good news that it can remove 1000 keys at a time without hitting
> timeouts. The output of 'du' will depend on when the leveldb compaction
> runs. If you do find that compaction leads to suicide timeouts on this osd
> (you would see a lot of 'leveldb:' output in the log), consider running
> offline compaction by adding 'leveldb compact on mount = true' to the osd
> config and restarting.
>
> Casey
>
>
> On 06/19/2017 11:01 AM, Dan van der Ster wrote:
>>
>> On Thu, Jun 15, 2017 at 7:56 PM, Casey Bodley <cbodley@xxxxxxxxxx> wrote:
>>>
>>> On 06/14/2017 05:59 AM, Dan van der Ster wrote:
>>>>
>>>> Dear ceph users,
>>>>
>>>> Today we had O(100) slow requests which were caused by deep-scrubbing
>>>> of the metadata log:
>>>>
>>>> 2017-06-14 11:07:55.373184 osd.155
>>>> [2001:1458:301:24::100:d]:6837/3817268 7387 : cluster [INF] 24.1d
>>>> deep-scrub starts
>>>> ...
>>>> 2017-06-14 11:22:04.143903 osd.155
>>>> [2001:1458:301:24::100:d]:6837/3817268 8276 : cluster [WRN] slow
>>>> request 480.140904 seconds old, received at 2017-06-14
>>>> 11:14:04.002913: osd_op(client.3192010.0:11872455 24.be8b305d
>>>> meta.log.8d4fcb63-c314-4f9a-b3b3-0e61719ec258.54 [call log.add] snapc
>>>> 0=[] ondisk+write+known_if_redirected e7752) currently waiting for
>>>> scrub
>>>> ...
>>>> 2017-06-14 11:22:06.729306 osd.155
>>>> [2001:1458:301:24::100:d]:6837/3817268 8277 : cluster [INF] 24.1d
>>>> deep-scrub ok
>>>>
>>>> We have log_meta: true, log_data: false on this (our only) region [1],
>>>> which IIRC we setup to enable indexless buckets.
>>>>
>>>> I'm obviously unfamiliar with rgw meta and data logging, and have a
>>>> few questions:
>>>>
>>>>    1. AFAIU, it is used by the rgw multisite feature. Is it safe to turn
>>>> it off when not using multisite?
>>>
>>>
>>> It's a good idea to turn that off, yes.
>>>
>>> First, make sure that you have configured a default realm/zonegroup/zone:
>>>
>>> $ radosgw-admin realm default --rgw-realm <realm name>  (you can
>>> determine
>>> realm name from 'radosgw-admin realm list')
>>> $ radosgw-admin zonegroup default --rgw-zonegroup default
>>> $ radosgw-admin zone default --rgw-zone default
>>>
>> Thanks. This had already been done, as confirmed with radosgw-admin
>> realm get-default.
>>
>>> Then you can modify the zonegroup (aka region):
>>>
>>> $ radosgw-admin zonegroup get > zonegroup.json
>>> $ sed -i 's/log_meta": "true/log_meta":"false/' zonegroup.json
>>> $ radosgw-admin zonegroup set < zonegroup.json
>>>
>>> Then commit the updated period configuration:
>>>
>>> $ radosgw-admin period update --commit
>>>
>>> Verify that the resulting period contains "log_meta": "false". Take care
>>> with future radosgw-admin commands on the zone/zonegroup, as they may
>>> revert
>>> log_meta back to true [1].
>>>
>> Great, this worked. FYI (and for others trying this in future), the
>> period update --commit blocks all rgws for ~30s while they reload the
>> realm.
>>
>>>>    2. I started dumping the output of radosgw-admin mdlog list, and
>>>> cancelled it after a few minutes. It had already dumped 3GB of json
>>>> and I don't know how much more it would have written. Is something
>>>> supposed to be trimming the mdlog automatically?
>>>
>>>
>>> There is automated mdlog trimming logic in master, but not jewel/kraken.
>>> And
>>> this logic won't be triggered if there is only one zone [2].
>>>
>>>>    3. ceph df doesn't show the space occupied by omap objects -- is
>>>> there an indirect way to see how much space these are using?
>>>
>>>
>>> You can inspect the osd's omap directory: du -sh
>>> /var/lib/ceph/osd/osd0/current/omap
>>>
>> Cool. osd.155 (holding shard 54) has 3.3GB of omap, compared with
>> ~100-300MB on other OSDs.
>>
>>>>    4. mdlog status has markers going back to 2016-10, see [2]. I suppose
>>>> we're not using this feature correctly? :-/
>>>>
>>>>    5. Suppose I were to set log_meta: false -- how would I delete these
>>>> log entries now that they are not needed?
>>>
>>>
>>> There is a 'radosgw-admin mdlog trim' command that can be used to trim
>>> them
>>> one --shard-id (from 0 to 63) at a time. An entire log shard can be
>>> trimmed
>>> with:
>>>
>>> $ radosgw-admin mdlog trim --shard-id 0 --period
>>> 8d4fcb63-c314-4f9a-b3b3-0e61719ec258 --end-time 2020-1-1
>>>
>>> *However*, there is a risk that bulk operations on large omaps will
>>> affect
>>> cluster health by taking down OSDs. Not only can this bulk deletion take
>>> long enough to trigger the osd/filestore suicide timeouts, the resulting
>>> leveldb compaction after deletion is likely to block other omap
>>> operations
>>> and hit the timeouts as well. This seems likely in your case, based on
>>> the
>>> fact that you're already having issues with scrub.
>>
>> We did this directly on shard 54, and indeed the command is taking a
>> looong time (but with no slow requests or osds being marked down).
>> After 45 minutes, du is still 3.3GB, so I can't tell if it's
>> progressing. I see ~1000 _omap_rmkeys messages every ~2 seconds:
>>
>> 2017-06-19 16:57:34.347222 7fc602640700 15
>> filestore(/var/lib/ceph/osd/ceph-155) _omap_rmkeys
>> 24.1d_head/#24:ba0cd17d:::met
>> a.log.8d4fcb63-c314-4f9a-b3b3-0e61719ec258.54:head#
>> 2017-06-19 16:57:34.347319 7fc602640700 10 filestore oid:
>> #24:ba0cd17d:::meta.log.8d4fcb63-c314-4f9a-b3b3-0e61719ec258.54:h
>> ead# not skipping op, *spos 67765185.0.0
>> 2017-06-19 16:57:34.347326 7fc602640700 10 filestore  > header.spos 0.0.0
>> 2017-06-19 16:57:34.347351 7fc602640700 15
>> filestore(/var/lib/ceph/osd/ceph-155) _omap_rmkeys
>> 24.1d_head/#24:ba0cd17d:::met
>> a.log.8d4fcb63-c314-4f9a-b3b3-0e61719ec258.54:head#
>> 2017-06-19 16:57:34.347373 7fc602640700 10 filestore oid:
>> #24:ba0cd17d:::meta.log.8d4fcb63-c314-4f9a-b3b3-0e61719ec258.54:h
>> ead# not skipping op, *spos 67765185.0.1
>> 2017-06-19 16:57:34.347379 7fc602640700 10 filestore  > header.spos 0.0.0
>> ...
>>
>> Does that look correct?
>>
>> Thanks for all the help!
>>
>> -- Dan
>
>
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