Re: Performance issues related to scrubbing

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Hello,

On Tue, 16 Feb 2016 10:46:32 -0800 Cullen King wrote:

> Thanks for the helpful commentary Christian. Cluster is performing much
> better with 50% more spindles (12 to 18 drives), along with setting scrub
> sleep to 0.1. Didn't see really any gain from moving from the Samsung 850
> Pro journal drives to Intel 3710's, even though dd and other direct tests
> of the drives yielded much better results. rados bench with 4k requests
> are still awfully low. I'll figure that problem out next.
> 
Got examples, numbers, watched things with atop?
4KB rados benches are what can make my CPUs melt on the cluster here
that's most similar to yours. ^o^

> I ended up bumping up the number of placement groups from 512 to 1024
> which should help a little bit. Basically it'll change the worst case
> scrub performance such that it is distributed a little more across
> drives rather than clustered on a single drive for longer.
> 
Of course with osd_max_scrubs at its default of 1 there should never be
more than one scrub per OSD. 
However I seem to vaguely remember that this is per "primary" scrub, so in
case of deep-scrubs there could still be plenty of contention going on.
Again, I've always had a good success with that manually kicked off scrub
of all OSDs. 
It seems to sequence things nicely and finishes within 4 hours on my
"good" production cluster.

> I think the real solution here is to create a secondary SSD pool, pin
> some radosgw buckets to it and put my thumbnail data on the smaller,
> faster pool. I'll reserve the spindle based pool for original high res
> photos, which are only read to create thumbnails when necessary. This
> should put the majority of my random read IO on SSDs, and thumbnails
> average 50kb each so it shouldn't be too spendy. I am considering trying
> the newer samsung sm863 drives as we are read heavy, any potential data
> loss on this thumbnail pool will not be catastrophic.
> 
I seriously detest it when makers don't have they endurance data on the
web page with all the other specifications and make you look up things in
a slightly hidden PDF. 
Then giving the total endurance and making you calculate drive writes per
day. ^o^
Only to find that these have 3 DWPD, which is nothing to be ashamed off
and should be fine for this particular use case.

However take a look at this old posting of mine:
http://lists.opennebula.org/pipermail/ceph-users-ceph.com/2014-October/043949.html

With that in mind, I'd recommend you do some testing with real world data
before you invest too much into something that will wear out long before
it has payed for itself.

Christian

> Third, it seems that I am also running into the known "Lots Of Small
> Files" performance issue. Looks like performance in my use case will be
> drastically improved with the upcoming bluestore, though migrating to it
> sounds painful!
> 
> On Thu, Feb 4, 2016 at 7:56 PM, Christian Balzer <chibi@xxxxxxx> wrote:
> 
> >
> > Hello,
> >
> > On Thu, 4 Feb 2016 08:44:25 -0800 Cullen King wrote:
> >
> > > Replies in-line:
> > >
> > > On Wed, Feb 3, 2016 at 9:54 PM, Christian Balzer
> > > <c-balzer@xxxxxxxxxxxxxxx> wrote:
> > >
> > > >
> > > > Hello,
> > > >
> > > > On Wed, 3 Feb 2016 17:48:02 -0800 Cullen King wrote:
> > > >
> > > > > Hello,
> > > > >
> > > > > I've been trying to nail down a nasty performance issue related
> > > > > to scrubbing. I am mostly using radosgw with a handful of buckets
> > > > > containing millions of various sized objects. When ceph scrubs,
> > > > > both regular and deep, radosgw blocks on external requests, and
> > > > > my cluster has a bunch of requests that have blocked for > 32
> > > > > seconds. Frequently OSDs are marked down.
> > > > >
> > > > From my own (painful) experiences let me state this:
> > > >
> > > > 1. When your cluster runs out of steam during deep-scrubs, drop
> > > > what you're doing and order more HW (OSDs).
> > > > Because this is a sign that it would also be in trouble when doing
> > > > recoveries.
> > > >
> > >
> > > When I've initiated recoveries from working on the hardware the
> > > cluster hasn't had a problem keeping up. It seems that it only has a
> > > problem with scrubbing, meaning it feels like the IO pattern is
> > > drastically different. I would think that with scrubbing I'd see
> > > something closer to bursty sequential reads, rather than just
> > > thrashing the drives with a more random IO pattern, especially given
> > > our low cluster utilization.
> > >
> > It's probably more pronounced when phasing in/out entire OSDs, where it
> > also has to read the entire (primary) data off it.
> >
> > >
> > > >
> > > > 2. If you cluster is inconvenienced by even mere scrubs, you're
> > > > really in trouble.
> > > > Threaten the penny pincher with bodily violence and have that new
> > > > HW phased in yesterday.
> > > >
> > >
> > > I am the penny pincher, biz owner, dev and ops guy for
> > > http://ridewithgps.com :) More hardware isn't an issue, it just feels
> > > pretty crazy to have this low of performance on a 12 OSD system.
> > > Granted, that feeling isn't backed by anything concrete! In general,
> > > I like to understand the problem before I solve it with hardware,
> > > though I am definitely not averse to it. I already ordered 6 more
> > > 4tb drives along with the new journal SSDs, anticipating the need.
> > >
> > > As you can see from the output of ceph status, we are not space
> > > hungry by any means.
> > >
> >
> > Well, in Ceph having just one OSD pegged to max will impact
> > (eventually) everything when they need to read/write primary PGs on it.
> >
> > More below.
> >
> > >
> > > >
> > > > > According to atop, the OSDs being deep scrubbed are reading at
> > > > > only 5mb/s to 8mb/s, and a scrub of a 6.4gb placement group
> > > > > takes 10-20 minutes.
> > > > >
> > > > > Here's a screenshot of atop from a node:
> > > > > https://s3.amazonaws.com/rwgps/screenshots/DgSSRyeF.png
> > > > >
> > > > This looks familiar.
> > > > Basically at this point in time the competing read request for all
> > > > the objects clash with write requests and completely saturate your
> > > > HD (about 120 IOPS and 85% busy according to your atop screenshot).
> > > >
> > >
> > > In your experience would the scrub operation benefit from a bigger
> > > readahead? Meaning is it more sequential than random reads? I already
> > > bumped /sys/block/sd{x}/queue/read_ahead_kb to 512kb.
> > >
> > I played with that long time ago (in benchmark scenarios) and didn't
> > see any noticeable improvement.
> > Deep-scrub might (fragmentation could hurt it though), regular scrub
> > not so much.
> >
> > > About half of our reads are on objects with an average size of 40kb
> > > (map thumbnails), and the other half are on photo thumbs with a size
> > > between 10kb and 150kb.
> > >
> >
> > Noted, see below.
> >
> > > After doing a little more researching, I came across this:
> > >
> > >
> > http://tracker.ceph.com/projects/ceph/wiki/Optimize_Newstore_for_massive_small_object_storage
> > >
> > > Sounds like I am probably running into issues with lots of random
> > > read IO, combined with known issues around small files. To give an
> > > idea, I have about 15 million small map thumbnails stored in my two
> > > largest buckets, and I am pushing out about 30 requests per second
> > > right now from those two buckets.
> > >
> > This is certainly a factor, but that knowledge of a future improvement
> > won't help you with your current problem of course. ^_-
> >
> > >
> > >
> > > > There are ceph configuration options that can mitigate this to some
> > > > extend and which I don't see in your config, like
> > > > "osd_scrub_load_threshold" and "osd_scrub_sleep" along with the
> > > > various IO priority settings.
> > > > However the points above still stand.
> > > >
> > >
> > > Yes, I have a running series of notes of config options to try out,
> > > just wanted to touch base with other community members before
> > > shooting in the dark.
> > >
> > osd_scrub_sleep is probably the most effective immediately available
> > option for you to prevent slow, stalled IO.
> > At the obvious cost of scrubs taking even longer.
> > There is of course also the option to disable scrubs entirely until
> > your HW has been upgraded.
> >
> > >
> > > >
> > > > XFS defragmentation might help, significantly if your FS is badly
> > > > fragmented. But again, this is only a temporary band-aid.
> > > >
> > > > > First question: is this a reasonable speed for scrubbing, given a
> > > > > very lightly used cluster? Here's some cluster details:
> > > > >
> > > > > deploy@drexler:~$ ceph --version
> > > > > ceph version 0.94.1-5-g85a68f9
> > > > > (85a68f9a8237f7e74f44a1d1fbbd6cb4ac50f8e8)
> > > > >
> > > > >
> > > > > 2x Xeon E5-2630 per node, 64gb of ram per node.
> > > > >
> > > > More memory can help by keeping hot objects in the page cache (so
> > > > the actual disks need not be read and can write at their full IOPS
> > > > capacity). A lot of memory (and the correct sysctl settings) will
> > > > also allow for a large SLAB space, keeping all those directory
> > > > entries and other bits in memory without having to go to disk to
> > > > get them.
> > > >
> > > > You seem to be just fine CPU wise.
> > > >
> > >
> > > I thought about bumping each node up to 128gb of ram as another cheap
> > > insurance policy. I'll try that after the other changes. I'd like to
> > > know why so I'll try and change one thing at a time, though I am
> > > also just eager to have this thing stable.
> > >
> >
> > For me everything was sweet and dandy as long all the really hot
> > objects did fit in the page cache and the FS bits where all in SLAB
> > (no need to go to disk for a "ls -R").
> >
> > Past the point it all went to molasses land "quickly".
> >
> > >
> > > >
> > > > >
> > > > > deploy@drexler:~$ ceph status
> > > > >     cluster 234c6825-0e2b-4256-a710-71d29f4f023e
> > > > >      health HEALTH_WARN
> > > > >             118 requests are blocked > 32 sec
> > > > >      monmap e1: 3 mons at {drexler=
> > > > > 10.0.0.36:6789/0,lucy=10.0.0.38:6789/0,paley=10.0.0.34:6789/0}
> > > > >             election epoch 296, quorum 0,1,2 paley,drexler,lucy
> > > > >      mdsmap e19989: 1/1/1 up {0=lucy=up:active}, 1 up:standby
> > > > >      osdmap e1115: 12 osds: 12 up, 12 in
> > > > >       pgmap v21748062: 1424 pgs, 17 pools, 3185 GB data, 20493
> > > > > kobjects 10060 GB used, 34629 GB / 44690 GB avail
> > > > >                 1422 active+clean
> > > > >                    1 active+clean+scrubbing+deep
> > > > >                    1 active+clean+scrubbing
> > > > >   client io 721 kB/s rd, 33398 B/s wr, 53 op/s
> > > > >
> > > > You want to avoid having scrubs going on willy-nilly in parallel
> > > > and at high peek times, even IF your cluster is capable of
> > > > handling them.
> > > >
> > > > Depending on how busy your cluster is and its usage pattern, you
> > > > may do what I did.
> > > > Kick off a deep scrub of all OSDs "ceph osd deep-scrub \*" like
> > > > 01:00 on a Saturday morning.
> > > > If your cluster is fast enough, it will finish before 07:00
> > > > (without killing your client performance) and all regular scrubs
> > > > will now happen in that time frame as well (given default
> > > > settings). If your cluster isn't fast enough, see my initial 2
> > > > points. ^o^
> > > >
> > >
> > > The problem is our cluster is the image and upload store for our site
> > > which is a reasonably busy site international site. We have about
> > > 60% of our customers in North America, and 30% or so in Europe and
> > > Asia. We definitely would be better off with more scrubs between
> > > 11pm and 7am -8 to 0 GMT, though we can't afford to slam the cluster.
> > >
> > > I suppose that our cluster is a much more random mix of reads than
> > > many others using ceph as a RBD store. Operating systems probably
> > > have a stronger mix of sequential reads, whereas our users are
> > > concurrently viewing different pages with different images, a more
> > > random workload.
> > >
> > > It sounds like we have to maintain a cluster storage capacity of less
> > > than 25% in order to have reasonable performance. I guess this makes
> > > sense, we have much more random IO needs than storage needs.
> > >
> > In your use case (and most others) random IOPS tends to be the
> > bottleneck long long before either space or sequential bandwidth
> > becomes and issues.
> >
> > More spindles, more IOPS. See below. ^o^
> >
> > >
> > > >
> > > > > deploy@drexler:~$ ceph osd tree
> > > > > ID WEIGHT   TYPE NAME        UP/DOWN REWEIGHT PRIMARY-AFFINITY
> > > > > -1 43.67999 root default
> > > > > -2 14.56000     host paley
> > > > >  0  3.64000         osd.0         up  1.00000          1.00000
> > > > >  3  3.64000         osd.3         up  1.00000          1.00000
> > > > >  6  3.64000         osd.6         up  1.00000          1.00000
> > > > >  9  3.64000         osd.9         up  1.00000          1.00000
> > > > > -3 14.56000     host lucy
> > > > >  1  3.64000         osd.1         up  1.00000          1.00000
> > > > >  4  3.64000         osd.4         up  1.00000          1.00000
> > > > >  7  3.64000         osd.7         up  1.00000          1.00000
> > > > > 11  3.64000         osd.11        up  1.00000          1.00000
> > > > > -4 14.56000     host drexler
> > > > >  2  3.64000         osd.2         up  1.00000          1.00000
> > > > >  5  3.64000         osd.5         up  1.00000          1.00000
> > > > >  8  3.64000         osd.8         up  1.00000          1.00000
> > > > > 10  3.64000         osd.10        up  1.00000          1.00000
> > > > >
> > > > >
> > > > > My OSDs are 4tb 7200rpm Hitachi DeskStars, using XFS, with
> > > > > Samsung 850 Pro journals (very slow, ordered s3700 replacements,
> > > > > but shouldn't pose problems for reading as far as I understand
> > > > > things).
> > > >
> > > > Just to make sure, these are genuine DeskStars?
> > > > I'm asking both because AFAIK they are out of production and their
> > > > direct successors, the Toshiba DT drives (can) have a nasty
> > > > firmware bug that totally ruins their performance (from ~8 hours
> > > > per week to permanently until power-cycled).
> > > >
> > >
> > > These are original deskstars. Didn't realize they weren't in
> > > production, I just grabbed 6 more of the Hitachi DeskStar NAS
> > > edition 4tb drives, which are readily available. I probably should
> > > have ordered 6tb drives, as I'd end up with better seek times due to
> > > them not being fully utilized - the data would reside closer to the
> > > center of the platters.
> > >
> > Ah, Deskstar NAS, yes, these still are in production.
> >
> > I'd get more, smaller, faster HDDs instead.
> > HW cache on your controller can also help (depends on the model/FW if
> > it is used efficiently in JBOD mode).
> >
> > And since your space utilization is small (though of course that can
> > and will change over time of course), you may very well benefit from
> > going SSD.
> >
> > SSD pools if you think you can fit (economically) a set of your high
> > access data like the thumbnails on it.
> >
> > SSD cache tiers are a bit more dubious when comes to rewards, but that
> > depends a lot on the hot data set.
> > Plenty of discussion in here about that.
> >
> > Regards,
> >
> > Christian
> > >
> > > >
> > > > Regards,
> > > >
> > > > Christian
> > > > > MONs are co-located
> > > > > with OSD nodes, but the nodes are fairly beefy and has very low
> > > > > load. Drives are on a expanding backplane, with an LSI SAS3008
> > > > > controller.
> > > > >
> > > > > I have a fairly standard config as well:
> > > > >
> > > > > https://gist.github.com/kingcu/aae7373eb62ceb7579da
> > > > >
> > > > > I know that I don't have a ton of OSDs, but I'd expect a little
> > > > > better performance than this. Checkout munin of my three nodes:
> > > > >
> > > > >
> > > >
> > http://munin.ridewithgps.com/ridewithgps.com/drexler.ridewithgps.com/index.html#disk
> > > > >
> > > >
> > http://munin.ridewithgps.com/ridewithgps.com/paley.ridewithgps.com/index.html#disk
> > > > >
> > > >
> > http://munin.ridewithgps.com/ridewithgps.com/lucy.ridewithgps.com/index.html#disk
> > > > >
> > > > >
> > > > > Any input would be appreciated, before I start trying to
> > > > > micro-optimize config params, as well as upgrading to Infernalis.
> > > > >
> > > > >
> > > > > Cheers,
> > > > >
> > > > > Cullen
> > > >
> > > >
> > > > --
> > > > Christian Balzer        Network/Systems Engineer
> > > > chibi@xxxxxxx           Global OnLine Japan/Rakuten Communications
> > > > http://www.gol.com/
> > > >
> >
> >
> > --
> > Christian Balzer        Network/Systems Engineer
> > chibi@xxxxxxx           Global OnLine Japan/Rakuten Communications
> > http://www.gol.com/
> >


-- 
Christian Balzer        Network/Systems Engineer                
chibi@xxxxxxx   	Global OnLine Japan/Rakuten Communications
http://www.gol.com/
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