Re: Help needed for diagnosing slow_requests

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Am 17.08.18 um 14:23 schrieb Sage Weil:
> On Fri, 17 Aug 2018, Uwe Sauter wrote:
>>
>> Dear devs,
>>
>> I'm posting on ceph-devel because I didn't get any feedback on ceph-users. This is an act of desperation…
>>
>>
>>
>> TL;DR: Cluster runs good with Kernel 4.13, produces slow_requests with Kernel 4.15. How to debug?
>>
>>
>> I'm running a combined Ceph / KVM cluster consisting of 6 hosts of 2 different kinds (details at the end).
>> The main difference between those hosts is CPU generation (Westmere / Sandybridge),  and number of OSD disks.
>>
>> The cluster runs Proxmox 5.2 which essentially is a Debian 9 but using Ubuntu kernels and the Proxmox
>> virtualization framework. The Proxmox WebUI also integrates some kind of Ceph management.
>>
>> On the Ceph side, the cluster has 3 nodes that run MGR, MON and OSDs while the other 3 only run OSDs.
>> OSD tree and CRUSH map are at the end. Ceph version is 12.2.7. All OSDs are BlueStore.
>>
>>
>> Now here's the thing:
>>
>> Some weeks ago Proxmox upgraded from kernel 4.13 to 4.15. Since then I'm getting slow requests that
>> cause blocked IO inside the VMs that are running on the cluster (but not necessarily on the host
>> with the OSD causing the slow request).
>>
>> If I boot back into 4.13 then Ceph runs smoothly again.
>>
>>
>> I'm seeking for help to debug this issue as I'm running out of ideas what I could else do.
>> So far I was using "ceph daemon osd.X dump_blocked_ops"to diagnose which always indicates that the
>> primary OSD scheduled copies on two secondaries (e.g. OSD 15: "event": "waiting for subops from 9,23")
>> but only one of those succeeds ("event": "sub_op_commit_rec from 23"). The other one blocks (there is
>> no commit message from OSD 9).
>>
>> On OSD 9 there is no blocked operation ("num_blocked_ops": 0) which confuses me a lot. If this OSD
>> does not commit there should be an operation that does not succeed, should it not?
>>
>> Restarting the (primary) OSD with the blocked operation clears the error, restarting the secondary OSD that
>> does not commit has no effect on the issue.
>>
>>
>> Any ideas on how to debug this further? What should I do to identify this as a Ceph issue and not
>> a networking or kernel issue?
> 
> This kind of issue has usually turned out to be a networking issue in the 
> past (either kernel or hardware, or some combinatino of hte two).  I would 
> suggest adding debug_ms=1 and reproducing and see if the replicated op 
> makes it to the blocked replica.  It sounds like it isn't.. in which case 
> cranking it up to debug_ms=20 and reproducing will should you more about 
> when ceph is reading data off the socket and when it isn't.  And while it 
> is stuck you can identify teh fd involved, checking the socket status with 
> netstat, see if the 'data waiting flag' is set or not, and so on.
> 
> But times when we've gotten to that level it's (I think) always ended up 
> being either jumbo fram eissues with the network hardware or problems 
> with, say, bonding.  I'm not sure how the kernel version might have 
> affected the hosts interaction with the network but it seems like it's 
> possible...
> 
> sage
> 

Sage,

thanks for those suggestions. I'll try next week and get back. You are right about jumbo frames and bonding (which I forgot to
mention).

Just to make sure I understand correctly:

- Setting debug_ms=1 or debug_ms=20 is done in ceph.conf?
- And the effect is that there will be debug output in the log files? And even more, when set to 20?


Have a nice weekend,

	Uwe


> 
>>
>>
>> I can provide more specific info if needed.
>>
>>
>> Thanks,
>>
>>   Uwe
>>
>>
>>
>> #### Hardware details ####
>> Host type 1:
>>   CPU: 2x Intel Xeon E5-2670
>>   RAM: 64GiB
>>   Storage: 1x SSD for OS, 3x HDD for Ceph (232GiB, some replaced by 931GiB)
>>   connected NIC: 1x 1GbE Intel (management access, MTU 1500), 1x 10GbE Myricom (Ceph & KVM, MTU 9000)
>>
>> Host type 2:
>>   CPU: 2x Intel Xeon E5606
>>   RAM: 96GiB
>>   Storage: 1x HDD for OS, 5x HDD for Ceph (465GiB, some replaced by 931GiB)
>>   connected NIC: 1x 1GbE Intel (management access, MTU 1500), 1x 10GbE Myricom (Ceph & KVM, MTU 9000)
>> #### End Hardware ####
>>
>> #### Ceph OSD Tree ####
>> ID  CLASS WEIGHT   TYPE NAME                    STATUS REWEIGHT PRI-AFF
>>  -1       12.72653 root default
>>  -2        1.36418     host px-alpha-cluster
>>   0   hdd  0.22729         osd.0                    up  1.00000 1.00000
>>   1   hdd  0.22729         osd.1                    up  1.00000 1.00000
>>   2   hdd  0.90959         osd.2                    up  1.00000 1.00000
>>  -3        1.36418     host px-bravo-cluster
>>   3   hdd  0.22729         osd.3                    up  1.00000 1.00000
>>   4   hdd  0.22729         osd.4                    up  1.00000 1.00000
>>   5   hdd  0.90959         osd.5                    up  1.00000 1.00000
>>  -4        2.04648     host px-charlie-cluster
>>   6   hdd  0.90959         osd.6                    up  1.00000 1.00000
>>   7   hdd  0.22729         osd.7                    up  1.00000 1.00000
>>   8   hdd  0.90959         osd.8                    up  1.00000 1.00000
>>  -5        2.04648     host px-delta-cluster
>>   9   hdd  0.22729         osd.9                    up  1.00000 1.00000
>>  10   hdd  0.90959         osd.10                   up  1.00000 1.00000
>>  11   hdd  0.90959         osd.11                   up  1.00000 1.00000
>> -11        2.72516     host px-echo-cluster
>>  12   hdd  0.45419         osd.12                   up  1.00000 1.00000
>>  13   hdd  0.45419         osd.13                   up  1.00000 1.00000
>>  14   hdd  0.45419         osd.14                   up  1.00000 1.00000
>>  15   hdd  0.45419         osd.15                   up  1.00000 1.00000
>>  16   hdd  0.45419         osd.16                   up  1.00000 1.00000
>>  17   hdd  0.45419         osd.17                   up  1.00000 1.00000
>> -13        3.18005     host px-foxtrott-cluster
>>  18   hdd  0.45419         osd.18                   up  1.00000 1.00000
>>  19   hdd  0.45419         osd.19                   up  1.00000 1.00000
>>  20   hdd  0.45419         osd.20                   up  1.00000 1.00000
>>  21   hdd  0.90909         osd.21                   up  1.00000 1.00000
>>  22   hdd  0.45419         osd.22                   up  1.00000 1.00000
>>  23   hdd  0.45419         osd.23                   up  1.00000 1.00000
>> #### End OSD Tree ####
>>
>> #### CRUSH map ####
>> # begin crush map
>> tunable choose_local_tries 0
>> tunable choose_local_fallback_tries 0
>> tunable choose_total_tries 50
>> tunable chooseleaf_descend_once 1
>> tunable chooseleaf_vary_r 1
>> tunable chooseleaf_stable 1
>> tunable straw_calc_version 1
>> tunable allowed_bucket_algs 54
>>
>> # devices
>> device 0 osd.0 class hdd
>> device 1 osd.1 class hdd
>> device 2 osd.2 class hdd
>> device 3 osd.3 class hdd
>> device 4 osd.4 class hdd
>> device 5 osd.5 class hdd
>> device 6 osd.6 class hdd
>> device 7 osd.7 class hdd
>> device 8 osd.8 class hdd
>> device 9 osd.9 class hdd
>> device 10 osd.10 class hdd
>> device 11 osd.11 class hdd
>> device 12 osd.12 class hdd
>> device 13 osd.13 class hdd
>> device 14 osd.14 class hdd
>> device 15 osd.15 class hdd
>> device 16 osd.16 class hdd
>> device 17 osd.17 class hdd
>> device 18 osd.18 class hdd
>> device 19 osd.19 class hdd
>> device 20 osd.20 class hdd
>> device 21 osd.21 class hdd
>> device 22 osd.22 class hdd
>> device 23 osd.23 class hdd
>>
>> # types
>> type 0 osd
>> type 1 host
>> type 2 chassis
>> type 3 rack
>> type 4 row
>> type 5 pdu
>> type 6 pod
>> type 7 room
>> type 8 datacenter
>> type 9 region
>> type 10 root
>>
>> # buckets
>> host px-alpha-cluster {
>>   id -2   # do not change unnecessarily
>>   id -6 class hdd   # do not change unnecessarily
>>   # weight 1.364
>>   alg straw
>>   hash 0  # rjenkins1
>>   item osd.0 weight 0.227
>>   item osd.1 weight 0.227
>>   item osd.2 weight 0.910
>> }
>> host px-bravo-cluster {
>>   id -3   # do not change unnecessarily
>>   id -7 class hdd   # do not change unnecessarily
>>   # weight 1.364
>>   alg straw
>>   hash 0  # rjenkins1
>>   item osd.3 weight 0.227
>>   item osd.4 weight 0.227
>>   item osd.5 weight 0.910
>> }
>> host px-charlie-cluster {
>>   id -4   # do not change unnecessarily
>>   id -8 class hdd   # do not change unnecessarily
>>   # weight 2.046
>>   alg straw
>>   hash 0  # rjenkins1
>>   item osd.7 weight 0.227
>>   item osd.8 weight 0.910
>>   item osd.6 weight 0.910
>> }
>> host px-delta-cluster {
>>   id -5   # do not change unnecessarily
>>   id -9 class hdd   # do not change unnecessarily
>>   # weight 2.046
>>   alg straw
>>   hash 0  # rjenkins1
>>   item osd.9 weight 0.227
>>   item osd.10 weight 0.910
>>   item osd.11 weight 0.910
>> }
>> host px-echo-cluster {
>>   id -11    # do not change unnecessarily
>>   id -12 class hdd    # do not change unnecessarily
>>   # weight 2.725
>>   alg straw2
>>   hash 0  # rjenkins1
>>   item osd.12 weight 0.454
>>   item osd.13 weight 0.454
>>   item osd.14 weight 0.454
>>   item osd.16 weight 0.454
>>   item osd.17 weight 0.454
>>   item osd.15 weight 0.454
>> }
>> host px-foxtrott-cluster {
>>   id -13    # do not change unnecessarily
>>   id -14 class hdd    # do not change unnecessarily
>>   # weight 3.180
>>   alg straw2
>>   hash 0  # rjenkins1
>>   item osd.18 weight 0.454
>>   item osd.19 weight 0.454
>>   item osd.20 weight 0.454
>>   item osd.22 weight 0.454
>>   item osd.23 weight 0.454
>>   item osd.21 weight 0.909
>> }
>> root default {
>>   id -1   # do not change unnecessarily
>>   id -10 class hdd    # do not change unnecessarily
>>   # weight 12.727
>>   alg straw
>>   hash 0  # rjenkins1
>>   item px-alpha-cluster weight 1.364
>>   item px-bravo-cluster weight 1.364
>>   item px-charlie-cluster weight 2.046
>>   item px-delta-cluster weight 2.046
>>   item px-echo-cluster weight 2.725
>>   item px-foxtrott-cluster weight 3.180
>> }
>>
>> # rules
>> rule replicated_ruleset {
>>   id 0
>>   type replicated
>>   min_size 1
>>   max_size 10
>>   step take default
>>   step chooseleaf firstn 0 type host
>>   step emit
>> }
>>
>> # end crush map
>> #### End CRUSH ####
>>




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