Sorry to take so long to reply ...
On Thu, 2015-12-17 at 11:53 -0500, Tony Schreiner wrote:
> Did you load the compat-openmpi environment module?
>
> module load mpi/compat-openmpi16-x86_64
Yes, but you can't load both mpi/openmpi-x86_64 and mpi/compat-
openmpi16-x86_64 as they are labelled as conflicting.
As I said, if you load just mpi/compat-openmpi16-x86_64 it can't find
the boost-openmpi library; if you load just mpi/openmpi-x86_64 it can't
find the correct libmpi version.
P.
>
>
> Tony
>
> On Thu, Dec 17, 2015 at 10:57 AM, Pete Biggs <pete@xxxxxxxxxxxx> wrote:
>
> >
> > After the 7.2 upgrade boost-openmpi-1.53.0-25 was installed, along
> > with openmpi-1.10.0-10. The old openmpi was then replaced with compat-
> > openmpi16-1.6.4-10. All fine.
> >
> > Except boost-openmpi has a dependency on the old libmpi.so.1 and the
> > new openmpi has libmpi.so.12:
> >
> > # ldd libboost_mpi-mt.so.1.53.0
> > linux-vdso.so.1 => (0x00007ffe8c182000)
> > libboost_serialization-mt.so.1.53.0 =>
> > /lib64/libboost_serialization-mt.so.1.53.0 (0x00007f39da4d2000)
> > libmpi.so.1 => not found
> > libmpi_cxx.so.1 => /usr/lib64/openmpi/lib/libmpi_cxx.so.1
> > (0x00007f39da2b6000)
> > librt.so.1 => /lib64/librt.so.1 (0x00007f39da0ae000)
> > libstdc++.so.6 => /lib64/libstdc++.so.6 (0x00007f39d9da5000)
> > libm.so.6 => /lib64/libm.so.6 (0x00007f39d9aa3000)
> > libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f39d988d000)
> > libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f39d9670000)
> > libc.so.6 => /lib64/libc.so.6 (0x00007f39d92af000)
> > libmpi.so.12 => /usr/lib64/openmpi/lib/libmpi.so.12
> > (0x00007f39d8fcc000)
> > libopen-rte.so.12 => /usr/lib64/openmpi/lib/libopen-rte.so.12
> > (0x00007f39d8d4f000)
> > libopen-pal.so.13 => /usr/lib64/openmpi/lib/libopen-pal.so.13
> > (0x00007f39d8aac000)
> > libdl.so.2 => /lib64/libdl.so.2 (0x00007f39d88a8000)
> > libutil.so.1 => /lib64/libutil.so.1 (0x00007f39d86a4000)
> > libhwloc.so.5 => /lib64/libhwloc.so.5 (0x00007f39d8476000)
> > /lib64/ld-linux-x86-64.so.2 (0x00007f39da987000)
> > libnuma.so.1 => /lib64/libnuma.so.1 (0x00007f39d8269000)
> > libpciaccess.so.0 => /lib64/libpciaccess.so.0 (0x00007f39d805f000)
> > libxml2.so.2 => /lib64/libxml2.so.2 (0x00007f39d7cf6000)
> > libz.so.1 => /lib64/libz.so.1 (0x00007f39d7adf000)
> > liblzma.so.5 => /lib64/liblzma.so.5 (0x00007f39d78ba000)
> >
> > We have tried switching to using compat-openmpi - but then the programs
> > don't find the boost library.
> >
> > There are other ways around it (setting the LD_LIBRARY_PATH variable or
> > putting in symlinks so things are found), but they seem to throw
> > segfaults with the code.
> >
> > Presumably this is just a packaging/compiling error - is there anyway
> > to trigger an update for the boost-openmpi package?
> >
> > Pete
> > _______________________________________________
> > CentOS mailing list
> > CentOS@xxxxxxxxxx
> > https://lists.centos.org/mailman/listinfo/centos
> >
>
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