On Mon, 1 Jul 2013, Reindl Harald wrote:
>
>
> Am 01.07.2013 15:36, schrieb me@xxxxxxxxxx:
>> I have a c6.4 machine that recently had some file system corruption. fsck was able
>> repair the file system but I am getting the following error when I try to
>> do yum update:
>>
>> [Errno 21] Is a directory: '/var/lib/yum/yumdb/e/2f883c08e3b596b66fcc19c6b4d73b11c9aaa43e-e2fsprogs-1.41.12-14.el6_4.2-x86_64/checksum_type'
>>
>> In searching Google, some suggested renaming the yumdb but that just results
>> in a traceback when I run yum
>
> you can do *without any issue*
>
> rm -rf /var/lib/yum/yumdb/*
> rm -rf /var/lib/yum/history/*
>
> and after *twice* "yum history new" there are no longer tracebacks
> been there, done that on a *lot* of machines multiple times to
> get rid of this tons of old metadata with no benefit
Ok, I am still getting a traceback, obviously, the first traceback is expected
but the last one os not. Below is what I did:
(router pts4) # cd /var/lib/yum/
(router pts4) # rm -r history/ yumdb/
(router pts4) # ll
total 12
drwxr-xr-x. 3 root root 4096 May 6 11:31 repos
drwxr-xr-x. 3 root root 4096 Jun 29 14:14 rpmdb-indexes
-rw-r--r--. 1 root root 36 May 6 11:31 uuid
(router pts4) # yum history new
Loaded plugins: downloadonly, fastestmirror, security
Traceback (most recent call last):
File "/usr/bin/yum", line 29, in <module>
yummain.user_main(sys.argv[1:], exit_code=True)
File "/usr/share/yum-cli/yummain.py", line 285, in user_main
errcode = main(args)
File "/usr/share/yum-cli/yummain.py", line 136, in main
result, resultmsgs = base.doCommands()
File "/usr/share/yum-cli/cli.py", line 438, in doCommands
return self.yum_cli_commands[self.basecmd].doCommand(self, self.basecmd, self.extcmds)
File "/usr/share/yum-cli/yumcommands.py", line 1503, in doCommand
ret = self._hcmd_new(base, extcmds)
File "/usr/share/yum-cli/yumcommands.py", line 1423, in _hcmd_new
base.history._create_db_file()
File "/usr/lib/python2.6/site-packages/yum/history.py", line 1645, in _create_db_file
cur.execute(op)
sqlite3.OperationalError: table trans_beg already exists
(router pts4) # yum history new
Loaded plugins: downloadonly, fastestmirror, security
history new
(router pts4) # yum update
Loaded plugins: downloadonly, fastestmirror, security
Loading mirror speeds from cached hostfile
* elrepo: elrepo.org
Setting up Update Process
Traceback (most recent call last):
File "/usr/bin/yum", line 29, in <module>
yummain.user_main(sys.argv[1:], exit_code=True)
File "/usr/share/yum-cli/yummain.py", line 285, in user_main
errcode = main(args)
File "/usr/share/yum-cli/yummain.py", line 136, in main
result, resultmsgs = base.doCommands()
File "/usr/share/yum-cli/cli.py", line 438, in doCommands
return self.yum_cli_commands[self.basecmd].doCommand(self, self.basecmd, self.extcmds)
File "/usr/share/yum-cli/yumcommands.py", line 232, in doCommand
return base.updatePkgs(extcmds, update_to=(basecmd == 'update-to'))
File "/usr/share/yum-cli/cli.py", line 725, in updatePkgs
self.update()
File "/usr/lib/python2.6/site-packages/yum/__init__.py", line 3735, in update
updates = self.up.getUpdatesTuples()
File "/usr/lib/python2.6/site-packages/yum/__init__.py", line 906, in <lambda>
up = property(fget=lambda self: self._getUpdates(),
File "/usr/lib/python2.6/site-packages/yum/__init__.py", line 726, in _getUpdates
self._up = rpmUtils.updates.Updates(self.rpmdb.simplePkgList(), self.pkgSack.simplePkgList())
File "/usr/lib/python2.6/site-packages/yum/rpmsack.py", line 502, in simplePkgList
return self.pkglist
File "/usr/lib/python2.6/site-packages/yum/rpmsack.py", line 232, in _get_pkglist
csumpkgtups = self.preloadPackageChecksums(load_packages=False)
File "/usr/lib/python2.6/site-packages/yum/rpmsack.py", line 979, in preloadPackageChecksums
rpmdbv = self.simpleVersion(main_only=True)[0]
File "/usr/lib/python2.6/site-packages/yum/rpmsack.py", line 1163, in simpleVersion
self._put_cached_simpleVersion_main(main)
File "/usr/lib/python2.6/site-packages/yum/rpmsack.py", line 1112, in _put_cached_simpleVersion_main
os.rename(rpmdbvfname + ".tmp", rpmdbvfname)
OSError: [Errno 21] Is a directory
(router pts4) #
As you can see, I am still getting the traceback.
I also ran the following to be sure I was not missing something else:
(router pts4) # rpm -qf /var/lib/yum
yum-3.2.29-40.el6.centos.noarch
(router pts4) # rpm -V yum
(router pts4) #
Any ideas what I am missing?
Regards,
--
Tom me@xxxxxxxxxx Spamtrap address me123@xxxxxxxxxx
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